LOCUS CCD61455.1 1633 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Copine family protein 2 protein.
ACCESSION BX284602-2772
PROTEIN_ID CCD61455.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="cpna-2"
/locus_tag="CELE_B0228.4"
/standard_name="B0228.4a"
/note="Partially confirmed by transcript evidence"
/db_xref="WormBase:WBGene00015061"
intron_pos 150:0 (1/20)
intron_pos 299:2 (2/20)
intron_pos 394:0 (3/20)
intron_pos 435:1 (4/20)
intron_pos 586:1 (5/20)
intron_pos 616:0 (6/20)
intron_pos 656:0 (7/20)
intron_pos 679:0 (8/20)
intron_pos 702:0 (9/20)
intron_pos 1214:0 (10/20)
intron_pos 1258:1 (11/20)
intron_pos 1301:2 (12/20)
intron_pos 1328:0 (13/20)
intron_pos 1361:2 (14/20)
intron_pos 1397:0 (15/20)
intron_pos 1441:0 (16/20)
intron_pos 1491:1 (17/20)
intron_pos 1516:1 (18/20)
intron_pos 1561:2 (19/20)
intron_pos 1595:0 (20/20)
BEGIN
1 MNDYEIRDLT GSSQKSNNQK ISNNSGESAH FNGTSENVKT ESDDDSTCSS SLNKLSNRHS
61 EPMNHLSVGG FVAKDLLSSL TIPLPQTVIR TCQSIDIDTP DRSRNDKTLT SFFYSSCKNL
121 LLTTIIPDPL DLVAAAVGQS TAQALLVAQI GWMVCVCCRC CLCKCIANGR GVRGQKKQIQ
181 EPTIADDDGR DLPYEVPGSI HIPKPVYNKK LSKSRSSSVP HVSVPSLVSS SADYKRLSMW
241 ETSLNVESDV EPLHTPPLVV GRKLDYIDKE GNNPSCCRER GTRKPGFRPL RGSGSPPPPD
301 PSTSTKVAVT SASEVKKIKD HKKQLKKEKE KKKKMDKKQS SSGGGFFTRW FGGSGSNNSQ
361 QNLAEDVIDA RSERKTAKQR EQELLQRSER RSGGRTHSHE EYRRHQQPSL MVNTNFDEDD
421 YATIDRVRRS NNREMSMPAS PRNVHFVDET SGPLSRTMNE SAFGDRAHLQ YRPRAQKGAA
481 GPTTRGAPTS SVNQLDEATL DLLRLSTEPS PVPSRRALPK SASLSSVQQK QPIKTADGGQ
541 LKIGSVYTWD QNSVDTTTDD ERAKDFLRGD RSSRLSPQSE RKNERQIQIR QQSSGPTNRR
601 ETEIEYEEKR QGPPVVRTTV EGKLKMEKIV GADLITVDSC ISSAWTVRDT VTNYKIKSTI
661 GKKSLILEEI KDGQSKYKIT LIENGETKME REASLDVPDF VNKKDYLAEV SKKLLSDLRE
721 DSESVSALTH IEVEIVEDVT NILKTYVIGE RADDVLAEEQ LRLHYEQTAD KTPSPIPLEK
781 VEKIYVDELQ KDKIELEDPE KADIHLIKDG RHFEGEGALK RIRRFETEES IEKPTVIRME
841 PRCAHAFADC DVAKKDDTSN YTVKIAVPLV HTITFLLKKS KMMRQQKAAG YEMEQEGQRF
901 EDETTLRRIK RYETEEEEEK QHVAVIQHVE EVKVATMKTQ REVEAEGGQY EMSQEGIHLR
961 GETTFKKRGK HLDSESSEER FMEREAEGGQ YAMQMEGERL LGEKKFRSKG RHYESESEES
1021 MASWNGGSPT LVDLVKKESS SIFEATFETA NNHSPIVAEV RRPKLKKENT TIGCTISNQK
1081 ATSANAELTT KHVNTEKGSG KFRELGEEQA MMLCGFENQK SSKEEVTGSR QQKNEIKVAF
1141 AAGSAETENT TISTTIFHDA DSFAVEGSSK SANSTATYGR FKEMSEENAS NMVYLQKSES
1201 SSSNLSGAET KMKHIQRQSS EARFSEFKQV AESCAVMIKN TGVERGSTSS TVAEAATEVI
1261 EETIIRVDEQ LEKKTTVIET EQASEVKMRE KGEERRKEEK RVSFAAEVQE KTMEAIDKSL
1321 GLDTSMEVEP AFQKPSIIKK PMKKERERRS RDLRQNAAPA FKPVRRNSLL QALAIGSPHN
1381 IPHFKTLDDI VKAIKHAGLE YSNLIFGIDY TKSNFYQGER TFDKRPLHTI DPAEMNPYQQ
1441 VIQIVGKTLS SFDADGQIPA YGFGDEEFTD HGIFNIAERY DLEKDCNGFE EVLRVYNEVT
1501 PTIEMSGPTN FVPLIDRAIE ICKEKHSYHI LVIVADGQVT NEKINQKAIA AASHYPLSII
1561 MVGVGDGPWN MMGRFDDNIP KRLFDNFHFV DFHKVMFNAP NADASFALNA LMEIPDQYKA
1621 IKELGLLKHS RRG
//