LOCUS CBX53322.1 1362 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans ZM domain-containing protein protein.
ACCESSION BX284606-2761
PROTEIN_ID CBX53322.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="hpo-34"
/locus_tag="CELE_F29G6.3"
/standard_name="F29G6.3d"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00009259"
/db_xref="EnsemblGenomes-Tr:F29G6.3c.1"
/db_xref="EnsemblGenomes-Tr:F29G6.3c.2"
/db_xref="EnsemblGenomes-Tr:F29G6.3d.1"
/db_xref="EnsemblGenomes-Tr:F29G6.3d.2"
/db_xref="EnsemblGenomes-Tr:F29G6.3d.3"
/db_xref="EnsemblGenomes-Tr:F29G6.3d.4"
/db_xref="EnsemblGenomes-Tr:F29G6.3d.5"
/db_xref="EnsemblGenomes-Tr:F29G6.3d.6"
/db_xref="EnsemblGenomes-Tr:F29G6.3d.7"
/db_xref="EnsemblGenomes-Tr:F29G6.3d.8"
/db_xref="UniProtKB/TrEMBL:E3W743"
/db_xref="WormBase:WBGene00009259"
intron_pos 20:0 (1/13)
intron_pos 53:2 (2/13)
intron_pos 93:0 (3/13)
intron_pos 128:0 (4/13)
intron_pos 162:0 (5/13)
intron_pos 198:0 (6/13)
intron_pos 993:0 (7/13)
intron_pos 1120:0 (8/13)
intron_pos 1166:0 (9/13)
intron_pos 1185:1 (10/13)
intron_pos 1276:0 (11/13)
intron_pos 1312:0 (12/13)
intron_pos 1328:0 (13/13)
BEGIN
1 MSKATSVSVH SSVSQKSAQH YDLPPIPQYD MPPIVVGEAV VGKAPSVASS RSGSHHSVAS
61 HHSHHSQHSH HSALTHDSES TISEGTLVNE PIVVGAHVAS EAPTPLAVGQ SFEHDAVIEQ
121 FKNLHGRDQS VVSSIVPASV HIQSDSEDSI APSKLTHSIA VGGVVDSHNG VNVLHRSHEV
181 EFVDFAAPAY YQPPSVVGAF DAHSEDSFGF EKVEYVDTHE DHHHKLEEQV PQVVHEHVIE
241 QHYEPYQIVH ENHNVLSVDF GEDQHSITHH DHDHHHHHHE SHVTHTFTSN VKQSRSNTAS
301 TYQSRQMLAH NVGPKITEEL RPAAVLEEEE VEVRPPVMAY VAPIPVKPPR THEESHIYNA
361 YETEIHQQKD IVKSTTVVLE DVRSGSEGIH IRADNSSSVD IIGVSSLRRK FEHGAPPPLS
421 PVFEMKKHEH HKHLDQHHHH KHQDVVVEQT QFQVGDNFIS SSSSKAIENH YDVPFDSYEI
481 VDKSENTKKS SSSYHASSSY HKQAPPLPLV DYHVYDTPTV EHFSHSPAFY TDDQRHHYVP
541 QIKVITEYRH INPRHHYVER QIRKADGSAI AQSPQVQTID YFKEINRAHH FVPSTPPSLF
601 NNKRESFHHH SFIPNSLEAE RKSRSVERAH HYLPDSPANV KDQRKIIREH HYVPLEKRSQ
661 SLDLKVVHPE HHYVPLVRKT TEDHQQKVNH EHHFIPAEKK TEAVKDVVHE HHYIPLTAHK
721 TDEHNVNITR EHHYIPLKTE QVQSKTEIER HNQYVPMTTH KETKSFDTGR SHSYIPLGGN
781 VEQSKTEIFR QHNFVPVVDK KEKNVEEINQ KHNYVPAHSN VAVSDKEPIS RHHNFVPLAT
841 KTVEETRHSN DLSHHHYMPL PAKREEGKTA AGDKVGYEHH YYPLASNTER VSVHKGQEHH
901 YVPLIAKPTE SHASKIVIQH QYIPLAMRHQ SVPRLPSEHN YIPIAIHDDS HQKVDLTNHQ
961 YLPPIVNAEQ KEAVKLYEHQ YVPLPPKKDS FANYSSKAPQ LPREHHYYPA PVRSVEHHQK
1021 HVHEQHNYIP AVHHHETNHQ LDRQHGYIPV AAKHEAKKNV LYEHQYIPPI TRTEQTNGYD
1081 RRHNYVPVGK TAKATTTDIH VHQDHQYVPQ ASPRKTISEK VSEHVQLGGS RKSTIQSGHH
1141 HHHHHDHENR NDVPSRPSSV ANYVKHQPHS RTSTVSTVRG APVQRVNPTV QQHVIYNPYG
1201 DHQSVRVVKN VREFVNVFGA THVVPPPTPL AGVPRLSQRS PISHETFQPH DECNSVKSSR
1261 KNTLVSVGKG IQINDAPRKS TCSSVASSRS SSVSTVSAPI LVGGNIAVPT PRSRNATLTQ
1321 ENVHEHDQYD DLIHVADMRK LFENYGPAHL PEYASNPSAY IH
//