LOCUS CBL87054.4 3012 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans RAVE complex protein Rav1 C-terminal
domain-containing protein protein.
ACCESSION BX284606-3508
PROTEIN_ID CBL87054.4
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="rbc-1"
/locus_tag="CELE_F54E4.1"
/standard_name="F54E4.1a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00004313"
/db_xref="EnsemblGenomes-Tr:F54E4.1a"
/db_xref="GOA:D6R8W9"
/db_xref="InterPro:IPR001680"
/db_xref="InterPro:IPR015943"
/db_xref="InterPro:IPR017986"
/db_xref="InterPro:IPR019775"
/db_xref="InterPro:IPR022033"
/db_xref="InterPro:IPR036322"
/db_xref="UniProtKB/TrEMBL:D6R8W9"
/db_xref="WormBase:WBGene00004313"
intron_pos 30:0 (1/31)
intron_pos 98:0 (2/31)
intron_pos 163:0 (3/31)
intron_pos 316:2 (4/31)
intron_pos 414:1 (5/31)
intron_pos 458:0 (6/31)
intron_pos 619:0 (7/31)
intron_pos 747:2 (8/31)
intron_pos 853:2 (9/31)
intron_pos 873:1 (10/31)
intron_pos 1052:2 (11/31)
intron_pos 1086:1 (12/31)
intron_pos 1116:1 (13/31)
intron_pos 1150:0 (14/31)
intron_pos 1250:2 (15/31)
intron_pos 1295:2 (16/31)
intron_pos 1437:0 (17/31)
intron_pos 1542:1 (18/31)
intron_pos 1659:0 (19/31)
intron_pos 1782:2 (20/31)
intron_pos 2059:0 (21/31)
intron_pos 2175:1 (22/31)
intron_pos 2233:0 (23/31)
intron_pos 2369:1 (24/31)
intron_pos 2507:1 (25/31)
intron_pos 2562:2 (26/31)
intron_pos 2614:0 (27/31)
intron_pos 2694:0 (28/31)
intron_pos 2727:0 (29/31)
intron_pos 2817:0 (30/31)
intron_pos 2969:1 (31/31)
BEGIN
1 MNAHQVITGA LNNGENVYAL GNIEGLTFTA CAVGSDVVIL DSDFNRVQII PESKNHLLVS
61 SLSCCQETGK IAVTYGNLVK ILEATNSGAD KSTLKSSIFQ FTWVETYSFT HKEPISSVQW
121 SMEGLRLLFV IGNKLVLHQH RSVSSTSRSS TSTPVTFCIS DDDLQERHTW EIIWTTSLPY
181 KPKYIRYSPD GYYLALSGDR DCFIKIFYQN GTEHTEPEFI AITLNHPAPV CGFEWRKTGR
241 YMPRKCISPI LMSWCEDRTS RIWKETPAPE TSIIDLTGEG GGDPLWDRQK QKKFLGKYIR
301 VKKTKTKILN KLRKMMPEKH QETDSNPIGI RAQIGKSPSL LDIPTSKDNT DHQETSFYLA
361 ATINAETDCL LVPSFNDHNN QKPFSVHWLN NKELVFSVGA EKLLAEAVLL DLDAVTHSND
421 EPEDSSPTES EKKRDFEHEN VRSEHSDATR TGGSVSSDAP SSKDILDVKL EILLRQWTKS
481 NDVLFSIHPV DGSLLTWTVE WLDDHFRQPV ISYSSRLPGA LPSSDSMSLH SKLNTFNPHE
541 PIYLDALRND MENKDTSVLF HDKLLERRVS NTIHVLTSHD NGTLNLWHMS VDDQSSFSHV
601 VSMTHISRMC GHRFQMQQII AHPVLPLLLT TSKFKSTKLK VDSTMDVLSE VILWKITPVG
661 PLCKNGGVKE LARVASPSIN GFSTVGWVPA ILPSCTLGTV CNSPSSCFIS CDGNQMIIYQ
721 AVLDARGLLS ELSNAQTAFN SRTPVDNYSD KILRTPSPRS DRAPSFLKQF NVVSTQSTAK
781 PGCVLEVGKI EDVNLNDLNL MFLHVFQSRI VMADDDDSSE SNPMSSVIDR SRSPTFRDKF
841 FIVIVDQKEN EDVIMMFSLT ISSQPPQSIP TFDTEALPGE KGFLRPSSPL APSMAKLNFE
901 AELVCRQVMP LPEGTRITNM APAAGHLSSS SLYPACETPY VLVSSDNDDS VRFWRCAKAT
961 DPVSPNKFEW REWNMISDNH PSELGVEGSI VKVNAAHSGR IACAYQKPNT TTDNNIIIEV
1021 AVFECESSGG VEWFREDSFR IQQNHFFEFS KPHFTGSQSK RHSGDQEHLH LLQQRTEVLR
1081 SSFRRGINAG KPTKPSYELI RAMENASSSV TDIAQMKLEN MVRLDWVSTE DGTHMLTVGM
1141 GTKVYIYAQI GQDPAQQNVT LMRESETSMR RPSIRKASSL LPNIQPDSRF TSWVCCRVLN
1201 LDTADGLPPI PTALSWVRDG ILIVGMQSEM RVYNQWNFKT VQEKTKSSNP AANPNIVSLT
1261 VSTSHSMLDQ LTRKKEALVS SRSRVFLEFV STMNKAHPKE NESQMVLNIL KSEGVFETAR
1321 MCSPILPQYH PKQLIVLLNA GKKRRVKAIL NHVLSSLKQK KGAAHNPLSR AASIKRMSTV
1381 DREDSTNATP ADARIDDDSM DYDEIDDIPL LPLYALMKVD FDSDVVVEKS EELMAKNTDE
1441 YDDLFDDGLD KDGDIDAILR DNESMYSGRS RHMSGGSDMG RNENQVSAIF TAKDYRKLTE
1501 LLTHTHLPGL SSVDQMHLLA IADTLSHFAS DAKDKVEQAN AAMKPVVQSV LGDNTAGGYA
1561 TAAAGVETVD ECGLRYLMAM KQHEYLMVCL PMKQRMELKK SGLSASNIIW AQHSETETEL
1621 LNAVPGMHRT NPSWEELKGL GVAWWLKNTA SLKICIEKIA KAAFQQNQDP MDASLFYLAL
1681 RKKNVLTHLF KTIRNTTMAD FFMNDFTKEH WQKVAAKNAF VLMSKQRFQH AAAFFLLSGS
1741 LKDAVQTLCS KCNDVQLALV VVRMYESDPE AQQAMINEVL CREVLGITYE EFETQRGCCD
1801 DDAPVSAHAS KEPFERSMAF WILKDYTRAA HTLVQEAQSD RLLSSLSDIF NFYSYLRKHP
1861 LVVRQRLNNV GAQVGTTEKL LALGRQLESI LTPPERRLFF RTSAEHMARG CPMLSLDVLN
1921 TLPKRISIVQ DYDEALKLLF GDNQNQAAPP PPPQMSIDVD WSKPTTSDEP DELKLDWSDE
1981 EKDDEEIEEV TNENTVDAPV IQNGAGIENA ATLQSQLVGA TDIFAQHMKF VASLRILTEE
2041 LSTLASGFDV DGGQLRNQLL NWLEREVEVL QTTCDYNVER KSDEANEDNH DSDYWSSTGP
2101 NYDQPSDLSK LSRASPSLTP KRITWLKANQ KLLRSFTSFC TLHSAHNHRL ASVLMELLLL
2161 LLNVQRDGDD DIVSKQLMAT GVNTFPLLDA AVSTPKMFVS SPLAYIENQG SDLLAAISEL
2221 SDVPNMAGDL QKCYMLYNLC QGFSCCIYLS LTDIDQIYSS MLNLAPKPAP IGGSENHVVT
2281 PPVKWPGVEA LVALLGREKE DDAPQLRLLI IESFLAISMS LFCFALSAYD SRWLFRLSAH
2341 EIDPSKFGLI FGGGGESKKA SHPPARPPRP AAPVVQKEST SENNGDNLRS RLNLRILGNE
2401 KLSTASKDSL PSEALHSKWV PPQKNIVQLF AEKPSVMMHE DDDDAYESDE EDKGNSYSDD
2461 EEDEDTLSCE NAAPASFAWQ LLRLALIQQQ LHRVKQFLIL VGFDPRDIPT VAPRIDSILQ
2521 QLNSWISLQH QTLKNFPGGI PNDVLPDMTI DMSDQHLAAS MKKYAVLVKK NNTPFESEDR
2581 KIQSIQRLWT FLVREDHLQE IFIKYIFSQH SMMESAPEPI DMIVGIDNNP HLPEAFKIVQ
2641 KDSEPIVAFG CNQESPGLIV VSNGRELQEM DMSNVFKDQY DQTSWMWNRA DLDMKNIHSK
2701 RDALRDNDDY QIFTDTNSQN VKHTNVMIKR HIPGVRRIDS HPHAPFYVTG SSDGSIKVWK
2761 WGAKDTVYTA RVAGQHAKVS KIAFSCNGNK FAAVDGDGML CLWQASQATE QKKPFFSQRC
2821 HNKSATDVRF LGHSASVLLT AGSSSLDYNL GLWDTLLPTN RALVHSWVAH PEGATCALYV
2881 PNQQTIFSGG RHGEICLWDI RQRQLRHTIK AFDQMHVVKT LATDSAQDLI VSGSSEGDIK
2941 IWSADAIPQL MYSLPGEHTA KGGFSFRQVG QSTVQGVQQL FIDQNMRLFS CGADASLKFR
3001 TLPSIFNMTS LL
//