LOCUS CBJ25073.1 1266 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans P-GlycoProtein related protein.
ACCESSION BX284606-2710
PROTEIN_ID CBJ25073.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="pgp-4"
/locus_tag="CELE_F42E11.1"
/standard_name="F42E11.1b"
/note="Product from WormBase gene class pgp"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00003998"
/db_xref="EnsemblGenomes-Tr:F42E11.1b"
/db_xref="GOA:D3KFS6"
/db_xref="InterPro:IPR003439"
/db_xref="InterPro:IPR003593"
/db_xref="InterPro:IPR011527"
/db_xref="InterPro:IPR017871"
/db_xref="InterPro:IPR027417"
/db_xref="InterPro:IPR036640"
/db_xref="InterPro:IPR039421"
/db_xref="UniProtKB/TrEMBL:D3KFS6"
/db_xref="WormBase:WBGene00003998"
intron_pos 33:0 (1/12)
intron_pos 67:1 (2/12)
intron_pos 115:0 (3/12)
intron_pos 258:2 (4/12)
intron_pos 297:2 (5/12)
intron_pos 433:0 (6/12)
intron_pos 624:1 (7/12)
intron_pos 821:0 (8/12)
intron_pos 889:0 (9/12)
intron_pos 969:2 (10/12)
intron_pos 1022:0 (11/12)
intron_pos 1182:2 (12/12)
BEGIN
1 MKIASEHVEL GSRPDKKKKK SRSSQGNSLS NLFRHSGCAD YLLLLGGLVL SAANGALLPF
61 NSLIFEGITN VLMKGEAQWQ NGTFDYDTFS SGIQHYCLLY FLLGVLMFTC TYFSNACLFT
121 MAERRLYCIR KHLLQSVLRQ DAKWFDENTV GGLTQKMSSG IEKIKDGIGD KIGVLVSGIA
181 TFISGVALGF YMCWQLTLVM LVTVPLQLGS MYLSAKHLNR ATKNEMSAYS SAGGMANEVI
241 AGIRTVIAFN AQPFEIERYG AQLAKARKMG IRKAIVLALC SAMPLFLMFV LMAGAFWYGA
301 ILTSYGVATS GTTFGVFWAV ILGTRRLGEA APHMGAITGA RLAVNDIFKV IDHEPEINCT
361 KQEGRRPDKV NGKLVFDNIQ FTYPTRPDVK ILKGVSFEVN PGETIALVGH SGCGKSTSIG
421 LLMRFYNQCA GSIKLDGIPI EDYNIQWLRS TIGIVQQEPI IFLATVAENV RMGDDSITDK
481 DIENACRQAN AHDFIGKLSE GYNTVIGAGA VQLSGGQKQR VAIARAIVRK PQILLLDEAT
541 SALDTESERM VQTALDKASE GRTTLCIAHR LSTIRNASKI LVFDQGLIPE RGIHDQLIRQ
601 NGIYANMVRA QEIEKAKDDT TQDDDELVEE DNYSISRRLS TSEEELRKSK SLLRDSTRFS
661 QSMLSVTSQV PDWEMESARE EMIEEGAMEA SMMDIFRFAK PEKMNIVIAL IFTLIRGITW
721 PAFSVVYGQL FKVFAEGGED LPVNALISSL WFVLLAVTSA VTTFISGSLL GKTGETMSSR
781 LRMDVFKNIM QQDATYFDDP KHNVGNLTSR LATDSQNVQA AIDHRLAEVL NGVVSLFTGI
841 AVAFWFGWSM APIGLITALL LVIAQSAVAQ YLKYRGPKDM ESAIEASRIV TESISNWKTV
901 QALTKQEYMF HAFTAASKNP RKRAFTKGLW QSLSFALAGS FFLWNFAIAY MFGLWLISNN
961 WTTPFAVFQV IEALNMASMS VMMAASYFPE YVRARISAGI MFTMIRQKAK IDNRGLTGET
1021 PDIRGDISMK GVYFAYPNRN RQLILNNFNM SAQFGETVAL VGPSGCGKST SIQLIERYYD
1081 AICGAVKIDD HDIRDISVKH LRHNIALVGQ EPTLFNLTIR ENITYGLENV SQEQVEKAAT
1141 LANIHSFVEN LPEGYDTSVG ASGGRLSGGQ KQRIAIARAI VRNPKILLLD EATSALDTES
1201 EKIVQEALDK ARLGRTCVVI AHRLSTIQNA DKIIVCRNGK AIEEGTHQTL LARRGLYYRL
1261 VEKQST
//