LOCUS CBA28118.1 3495 aa PRT BCT 16-AUG-2011
DEFINITION Curvibacter putative symbiont of Hydra magnipapillata
hypothetical protein protein.
ACCESSION FN543104-568
PROTEIN_ID CBA28118.1
SOURCE Curvibacter putative symbiont of Hydra magnipapillata
ORGANISM Curvibacter putative symbiont of Hydra magnipapillata
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Comamonadaceae; Curvibacter.
REFERENCE 1 (bases 1 to 1568541)
AUTHORS Rattei T.
JOURNAL Submitted (16-AUG-2009) to the INSDC. Rattei T., Genome Oriented
Bioinformatics, Technische Universitaet Muenchen, Am Forum 1,
Bavaria, 85354 Freising, GERMANY.
REFERENCE 2
AUTHORS Chapman J.A., Kirkness E.F., Simakov O., Hampson S.E., Mitros T.,
Weinmaier T., Rattei T., Balasubramanian P.G., Borman J., Busam D.,
Disbennett K., Pfannkoch C., Sumin N., Sutton G., Viswanathan L.,
Walenz B., Goodstein D.M., Hellsten U., Kawashima T.,
Prochnik S.E., Putnam N.H., Shu S., Blumberg B., Dana C.E., Gee L.,
Kibler D.F., Law L., Lindgens D., Martinez D.E., Peng J.,
Wigge P.A., Bertulat B., Guder C., Nakamura Y., Ozbek S.,
Watanabe H., Khalturin K., Hemmrich G., Franke A., Augustin R.,
Fraune S., Hayakawa E., Hayakawa S., Hirose M., Hwang J., Ikeo K.,
Nishimiya-Fujisawa C., Ogura A., Takahashi T., Steinmetz P.R.,
Zhang X., Aufschnaiter R., Eder M.K., Gorny A.K., Salvenmoser W.,
Heimberg A.M., Wheeler B.M., Peterson K.J., Boettger A.,
Tischler P., Wolf A., Gojobori T., Remington K.A., Strausberg R.L.,
Venter J., Technau U., Hobmayer B., Bosch T.C., Holstein T.W.,
Fujisawa T., Bode H.R., David C.N., Rokhsar D.S., Steele R.E.
TITLE The dynamic genome of Hydra
JOURNAL Nature 464(7288), 592-596(2010).
PUBMED 20228792
COMMENT The assembly of the Hydra magnipapillata yielded eight large
putatively
bacterial scaffolds as evidenced by:
(1) high G+C content (in contrast to the low G+C content of the
Hydra
genome)
(2) no high-copy repeat sequences typical of Hydra scaffolds
(3) closely spaced single-exon ORFs with best hits to bacterial
genes.
These scaffolds spanned a total of 4 Mbp and represent an estimated
98% of
the bacterial chromosome. Phylogenetic analysis of 16S rRNA and
conserved
clusters of orthologous groups of proteins (COGs) indicate that
this
bacterium is a novel Curvibacter species belonging to the family
Comamonadaceae (order Burkholderiales).
FEATURES Qualifiers
source /organism="Curvibacter putative symbiont of Hydra
magnipapillata"
/mol_type="genomic DNA"
/clone="HmaUn_WGA69518_1"
/db_xref="taxon:667019"
protein /transl_table=11
/locus_tag="Csp_A05680"
/db_xref="InterPro:IPR011049"
/db_xref="InterPro:IPR013783"
/db_xref="InterPro:IPR019960"
/db_xref="InterPro:IPR041498"
/db_xref="UniProtKB/TrEMBL:C9Y8W7"
BEGIN
1 MVVVDLTANA PTAAVLDPGS DTGTKGDGTT TVTTPRLSGS GGEAGATIQV YAGTSTTPVA
61 TGTVNADGTW AILPGLTSAS GGWASALTTG VQVLTVKQTD LAGNTSNASA PLSLTIAAPV
121 TVNAPTGFKL TGTTAVDTGF SQTDNITSAT SLTFTGSGAV AGGTVEVWQF DPTGTTALNR
181 LGTSSTTTSG TWTTGVITSN ASVLPESSSA YVIKARVLDA QGNASAFTTG ISGTDTLSLT
241 IDRTAPVTNL TFVGGLSVDS GRNSTDGVTN ESTQTLTVSG ATPGSRVQIF NGTSTTALAT
301 LTETSIPGTF SGQVTLPAGF TYSLRAAEVD TAGNVGSRST VALAVTVDQA APSALTINTP
361 PTSGAAQPTI TGSGAEANAI IELVSAADGT TVLASGYTST SGTWSVQLPN QATGSDQIIS
421 FKARQKDLAG NASDLQALAS SVTISATSAG VTANTTVVPQ LAAPVLKASS DSGAFNNDGI
481 TNATQPVLVI SGVSSSVTAG TQLKAYNGLV EVPGTFSAGT GAGVWEFTPT TPLAAANYSF
541 NVTQTVGSTT SAVSPNLAVT VDTASAAPVL ITTTAAVVGT NTSVTVTGEA GGIIEVIDSY
601 NNGTTTVSST VGRITLTSTA GTTVPVTLPG VGTHTLTLRQ TDLAGNTKLV GGADALSTGS
661 VVYAVNPAPA TAPVLNNLST SDDTFSITGS QTVNSQVVNY GTDNTTKNTT VTVSGSWANN
721 GDAIQLFQLQ SDGSTYVAVG TPITVTAGAW STTVNLNTNA TTTLKARASN PMGSSDFSAN
781 ALTITHDSLA PTVPTVGLAA ASDSGVQGDN RTNSATITLT GTAEAGALIR VYTGSAEVNS
841 GTVVYADSQG NWSKDVPNIS ASTTYVVTAT DKAGNVSSTG TATGVANTGT GTSYAVIFDN
901 TAPTSQLIIT GGANISTSLL PSVAGTGAEV VNGVGAFVEI YSSNNDLLGR TQANSAGAWS
961 LQLTSLDKAG SYAITAKTRD AAGNLQTTGT ATSTLTVADN TPIVAPTTTA LPNITLLAAD
1021 DTGTPGDNAT VLARPRLTGT GAVPAAVVQV FKSGSLIGSG VVNGDGTWTI TPTVDLTTGS
1081 NSLTATQQLA GQSVSASTSY SVTINTPTAS NAITITANIA TDDKINATEL NAGVTLSGAT
1141 TATSTSQVSL TLTNKVTGAS FTVNPTTVSS STWSYSLNTA TVNTYNLGGD SQLGNFNVKV
1201 TQTTSADSVS ATRDLTIGTT VPVGAPGGPT LAPASNSGNL NDNVTNITTP TFTGTAVAGS
1261 RVNLYYGGTN LIGTGVADTN GVYTIAYGAG LSSAPAALTD GVAATTGAGT TYSITAKYAD
1321 AANNNVASTA STALSMAVDL ASGKPVVNNT SANTTTINPI LSGTGEGRAT IQLFDNGSVT
1381 PFGTTQVRAD GTWSFQSTLD AGSHNIIATQ TDVAGNVASA GTTAVNLTLS GTATTAPTFP
1441 TLAANQDTAG ADTTGTTTDQ ISTVSKPSFN GTSTTAGATL QLWANGLLVA STTASSTANV
1501 GGTFDYAFTP ASYTTALTNV NQLRVVQVVN GVSSTPSASY TWTVDNFIAP STPVLTSSST
1561 DSYGNIYSAS VASGLTPTLT GTTEAGARVQ VLDNGAPVAT VTANASGVWT YAFTSLASGN
1621 HSITTLVTDL AGNQVTLNKS AAYVFKTLTA TPSTPTVQVL SGGDSGRSSS DGVTNVTSQT
1681 FKGTVSVTAG QDAPTVNIYD TVTVNGTPTT TLLGTATADN TGAWVYTATL ATGSTHTITA
1741 RAKDLSGNLS SATPVTTLTV DTTAPSTPAA PTLGTDQDTA GSGTTGTTGD GITRITQPVL
1801 TGTVEADTTV ELYDNGNLVG SLLTATGSYS ISPSAPLAQG AHSLTVQVVD AAGNRSAASP
1861 ATAITVDSTI SPISFFGLPS ANVLFSSGGV ITTTSTSPTL QGFGEAGATV TVFNGSNTVG
1921 TATVGTDGKW TVAPSSALTD NTTYTLTAQQ VDRAGNTSTA TAPLTLRVET GATAPTLSLQ
1981 TSSDTGTLDD GITARSTPTV VNKAGQGTAT AGDTVNLYND TTGAVLGSGV ADANGNWAIT
2041 LTSALVDNTY SLIAKVGAYN GGTTLGTLGL KIDSQPDAAP TGLALAADSD TGTLGDNLTN
2101 LSSPVIAGGG ATAGATVRLL EGSTLLGQGV ADGAGNWRVQ SATLSAGAHT LTAVQVDAAG
2161 NVSGASNALV VTVDTAAAAL SAPVLNAADD TGILDNRTSQ SSLTVSGQGA EANAWVSVFN
2221 TANGVTTQLA RVQAGADGKW SAALTGLPGS ATGTAYSLTA RQLDAAGNIS AASTALALVV
2281 DNAAAAPTIA LDSSSATNDT GTLGDGRTQN TRPVLKGTAE AGATVQVLLD AGNGTTTLLA
2341 TVVADSAGAF SWTPGADLTQ GTYRLLTRQT DVAGNTSVLS AAYSLLILPS TTVNTDILKT
2401 GGIGGGQLVD LNNDGLVDVM KYTTVAAQSV YLKTPTGLDY VQGPSLPAGF APSLSSLVDL
2461 NNDGIMEVAD PLANGATVGM RVYFWNSSQS TVSISAGVGS VNQASGYFAN WLGNGNLGAS
2521 LNGQLATAVA NGKMVGVAGN SNSDRQSAAY DANGDGYLDV MYASNSGVSG LWINKGDGTA
2581 FTATGLLNNA GAGVQGHITT IDYNNDGVLD IFSGSRVTQG LGNGVYTNVT VQVGFLSTGS
2641 SASNTNAMVA DVNADGWQDL LVWSQTYNFE VWLNVGGTFQ LQTTNKVFDL SGSLVLDGGV
2701 GVAAVSAMDI NGDRSLDLAL SNSGAGIVSY NATAVAENTY LRIEVANSTG NTTLSTGAQV
2761 TLYDSSTGNL VATQLVGNNV LGYRASRAGA PYAEFFGLDP AKTYDVVVRY PGNDQGVTVV
2821 SGKSGLGTTG IAGSVLREIV DSQLTAVSPG GKDVITVAPE NRSTATDGGN WVGTRYADYM
2881 VGDKGDDTFT PNGGNVGEAG DTIDLSNGGH DKVVFNTVLN TYTPANISGF SNGSFTQAGG
2941 NGDTINVSGL LTALGYTGAR DAASVASVLQ VVASRDLSSD GYTVSSSGAA THLMLQTKNS
3001 SGAWQNVALI KGAGGVELAN TLTPSNGNYL SALMANGNLQ LGQLSLGGTT PGITWSETQA
3061 NSLQALYSDL TVLADGGTFS QDFSKGSLKV TLGDAYAEDR LSLVTTGLVS VSGSNVSYNG
3121 VVIGTVDSTL NGTAGQALQV NLAFAGTSLS KAEQAVAVQA VARAVQYQNN GNTPPDFYRD
3181 LTLQVSDGET TAKMVGQLTV TPQANTSTVA GKSVVSGTNA VDTNLAGTSG NDTIVGYGGP
3241 VINASTSSAT GDTITGNGGR DTFVYRKGNV GRDTITDFAV YTVGNGTAAS TAADTINVAD
3301 LLQGYVPGTS SVNDFVRVVN NGSGVAQVQV DYNGKADGSS FMPYMVMNLT GVTLASTGMA
3361 SFDALRDSLV AHDQLVLSSQ QLTAQTTAMA KITAYAAGTG TLGVSDYVNA GVSGVSTLNL
3421 DTVNAKVQAA YVAAGNSASA VNDSFKVQDL VYPTITGAAA KLVTLTVNYA LQGGTTTSGK
3481 PMGWTSPTPQ TAATP
//