LOCUS CAT00970.1 1985 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans protein-tyrosine-phosphatase protein.
ACCESSION BX284602-3897
PROTEIN_ID CAT00970.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="ptp-3"
/locus_tag="CELE_C09D8.1"
/standard_name="C09D8.1e"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00004215"
/db_xref="EnsemblGenomes-Tr:C09D8.1e"
/db_xref="GOA:G5EE54"
/db_xref="InterPro:IPR000242"
/db_xref="InterPro:IPR000387"
/db_xref="InterPro:IPR003595"
/db_xref="InterPro:IPR003598"
/db_xref="InterPro:IPR003599"
/db_xref="InterPro:IPR003961"
/db_xref="InterPro:IPR007110"
/db_xref="InterPro:IPR013783"
/db_xref="InterPro:IPR016130"
/db_xref="InterPro:IPR029021"
/db_xref="InterPro:IPR036116"
/db_xref="InterPro:IPR036179"
/db_xref="UniProtKB/TrEMBL:G5EE54"
/db_xref="WormBase:WBGene00004215"
intron_pos 50:1 (1/24)
intron_pos 95:1 (2/24)
intron_pos 142:1 (3/24)
intron_pos 183:2 (4/24)
intron_pos 212:0 (5/24)
intron_pos 294:0 (6/24)
intron_pos 341:1 (7/24)
intron_pos 410:2 (8/24)
intron_pos 434:1 (9/24)
intron_pos 554:1 (10/24)
intron_pos 571:0 (11/24)
intron_pos 659:1 (12/24)
intron_pos 730:1 (13/24)
intron_pos 778:0 (14/24)
intron_pos 815:0 (15/24)
intron_pos 859:1 (16/24)
intron_pos 888:0 (17/24)
intron_pos 947:0 (18/24)
intron_pos 1119:0 (19/24)
intron_pos 1211:0 (20/24)
intron_pos 1244:0 (21/24)
intron_pos 1783:2 (22/24)
intron_pos 1868:0 (23/24)
intron_pos 1950:0 (24/24)
BEGIN
1 MQSSSILIYL LTVVGCSIAF LDNTLPLYLF KNLDTKETST VQTGLVTDKV RRVPPYFSYK
61 LERQYVVGVG GNINLTCVAV GYPMPRVFWK KTDLMVLDDP STAPIGKNVL TLTHVESTEN
121 FTCVAVSALG NIEATTTVIA KELPPPPVNI VVSSVTSESV VITWKPPKYN EAINKYVVNY
181 RLKYSEGRSS RGKTMETLEN SLVIDGLVAF QTYEFTVRSA GPVGVGLESL PVEAQTKPSK
241 PATAPVSPQA RSLNRDSILV KWGPCEQPNG LITGYKVYYT NDLVTTPIRE WKQHDAKSDE
301 FMTTINGLEP DSRYFVRVIA QNSEGDSPLS TLVTVATRQG IPGQPPMLTV KALDSRRMQL
361 TWDKPLYSSP VVGYTVRYNT SDGEKELTLT SPHEKHVVTG LHPDKYYYFR VAAYSDRGQG
421 EFTEPMISKT IASIPLSSPT IVSAAATSSK SVEIRWKGPE QKKLNGVLTA YRINYFRLED
481 SKTANLESVE YDEDMDDSSS FLDRMSVVVP SDATSYVLSD LLPYSSYEIT VAASTMDGYG
541 PESSIRVVKT LEDVPSAPRN FNAELTSATS VKLTWDAPAA ANGALLGYYV YLDRMVNGEP
601 VVEKGSKKRI VMIRDSSKRY FELDSLDPNT EYSFRLNAFN RNGDGEFSER KSIITQGIPP
661 EAPEIVSVSL DRDEPPVVAR IEWKMPKMKP NETPIEKYNL WLRAQGYPDS YVKAKTVDGT
721 DLSTTISGLW MGVVYDVLLA AENREGRSQN ATETIATPVG SPDGEPIDVQ YEVMKGKIVV
781 SWRPPSEEKR NGNITSYKAI LSAMDATADR YEQPVPAPST SSTFEVNVRR AYLFKVAAAT
841 MKGIGPYSPV LTINPDPAAL VGPPTNVRVE ATSNSTAVVQ WDFESQKADS FVVKYMHEPG
901 NRMDTEKWKQ LPVVSIDKEN PKRFAVVSDL NAHKPYAFCV LAVKNNRQGP CSDPPTVLES
961 VTPTYMVQNL RVLWKTSNSV QLTWEYNGPR NVGFYVNHTG RKDYVNHELQ EKTMSTPGFG
1021 QDVDEKHREY LWTNLRPHMM YTIHVGVRTL PPGARKYWPQ EVVTITDPTG PPFVDVPKLV
1081 DSSGTQPGQQ MIRLTPATEE YGPISHYWII LVPANYSTED VVNLDPIELE KATAEKRAQL
1141 ARSLSVSPSK KLKRKASEVG DDSQSASYHP KEKRARRATV PGAYVTARLS ADRVKQQYRN
1201 NQPFIVGDSQ LYDGFTNYPL EHNLHYRLMM RAFAKNDVRT KDSFEQRAPM SEKLSRMYSD
1261 SVLTEPFTIK SALRGASQKS SPWVGACIAF LVLFSIVGML ICWWLRCNKK SAGRHPRHGS
1321 ITKVALTGNI MNGGGGIPGE TSKLLSTSNE YGRQIMNPYE QMNGNHHMES SMDLYPLPTS
1381 HSRSNGYAPV PVAIPSLPNN GNNMTTVSHP AVPIAELANH IERLRMNNNA GFQSEFESIE
1441 TGQHFTWEHS SADMNKHKNR YANVAAYDHS RVVLSNVEGY PGMDYINANY VDGYDKPRSY
1501 IATQGPLPET FSDFWRMVWE EQSVTIVMLT NLEERSRVKC DQYWPSRGTA TYGDIEVTLL
1561 ESVHLAHYTM RTMRLKMVGE PEVREIKHLQ YTAWPDHGVP DHPTPFLIFL KRVKTLNPND
1621 AGPIISHCSA GIGRTGAFIV IDCMLERLRY DNTVDIYGCV TALRAQRSYM VQTEEQYIFI
1681 HDAVLDAVNS GSTEVPASRL HQHLHILSQP SADQLSGIDM EFRHLTTLKW TSNRCTVANL
1741 PVNRPKNRML SAVPYDSNRV IMRLLPGADG SDYINASWID GYKERGAYIA TQAPTNETAA
1801 DFWRAIWEHN SPIIAMLVRT NERGQEQCSD YWPLETGVQV GMLVVEPMAE YDMKHYHLRE
1861 FRISDINTRE VRTVRQFHFM EWPDVGKPHT ADHFLDFVTQ VHNTYAQFGC TGPITVHCCS
1921 GAGRTAVFIA LSIILDRMRA EHVVDVFTTV KLLRTERQNM IQEPEQYHFL YLAAYEYLAA
1981 YDNFS
//