LOCUS CAR97837.1 1023 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Protein argonaute-2 protein.
ACCESSION BX284606-3347
PROTEIN_ID CAR97837.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="alg-1"
/locus_tag="CELE_F48F7.1"
/standard_name="F48F7.1b"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00000105"
/db_xref="GOA:G5EES3"
/db_xref="InterPro:IPR003100"
/db_xref="InterPro:IPR003165"
/db_xref="InterPro:IPR012337"
/db_xref="InterPro:IPR014811"
/db_xref="InterPro:IPR032472"
/db_xref="InterPro:IPR032473"
/db_xref="InterPro:IPR032474"
/db_xref="InterPro:IPR036085"
/db_xref="InterPro:IPR036397"
/db_xref="UniProtKB/TrEMBL:G5EES3"
/db_xref="WormBase:WBGene00000105"
intron_pos 12:1 (1/6)
intron_pos 92:0 (2/6)
intron_pos 149:2 (3/6)
intron_pos 206:2 (4/6)
intron_pos 694:1 (5/6)
intron_pos 1012:0 (6/6)
BEGIN
1 MAAELNNTNT NESSNVASND PMSGGPQYLP GVMNSTIQQQ PQSATSSFLP SGPISSTSTS
61 SQVVPTSGAT QQPPFPSAQA AASTALQNDL EEIFNSPPTQ PQTFSDVPQR QAGSLAPGVP
121 IGNTSVSIGE PANTLGGGLP GGAPGQLPGG NQSGIQFQCP RRPNHGVEGR SILLRANHFA
181 VRIPGGTIQH YQVDVTPDKC PRRVNREIIS CLISAFSKYF TNIRPVYDGK RNMYTREPLP
241 IGRERMDFDV TLPGDSAVER QFSVSLKWVG QVSLSTLEDA MEGRVRQVPF EAVQAMDVIL
301 RHLPSLKYTP VGRSFFSPPV PNASGVMAGS CPPQASGAVA GGAHSAGQYH AESKLGGGRE
361 VWFGFHQSVR PSQWKMMLNI DVSATAFYRS MPVIEFIAEV LELPVQALAE RRALSDAQRV
421 KFTKEIRGLK IEITHCGQMR RKYRVCNVTR RPAQTQTFPL QLETGQTIEC TVAKYFYDKY
481 RIQLKYPHLP CLQVGQEQKH TYLPPEVCNI VPGQRCIKKL TDVQTSTMIK ATARSAPERE
541 REISNLVRKA EFSADPFAHE FGITINPAMT EVKGRVLSAP KLLYGGRTRA TALPNQGVWD
601 MRGKQFHTGI DVRVWAIACF AQQQHVKEND LRMFTNQLQR ISNDAGMPIV GNPCFCKYAV
661 GVEQVEPMFK YLKQNYSGIQ LVVVVLPGKT PVYAEVKRVG DTVLGIATQC VQAKNAIRTT
721 PQTLSNLCLK MNVKLGGVNS ILLPNVRPRI FNEPVIFFGC DITHPPAGDS RKPSIAAVVG
781 SMDAHPSRYA ATVRVQQHRQ EIISDLTYMV RELLVQFYRN TRFKPARIVV YRDGVSEGQF
841 FNVLQYELRA IREACMMLER GYQPGITFIA VQKRHHTRLF AVDKKDQVGK AYNIPPGTTV
901 DVGITHPTEF DFYLCSHAGI QGTSRPSHYH VLWDDNNLTA DELQQLTYQM CHTYVRCTRS
961 VSIPAPAYYA HLVAFRARYH LVDREHDSGE GSQPSGTSED TTLSNMARAV QVHPDANNVM
1021 YFA
//