LOCUS CAR97808.1 1087 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans AAA_23 domain-containing protein protein. ACCESSION BX284606-2946 PROTEIN_ID CAR97808.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="C23H4.6" /locus_tag="CELE_C23H4.6" /standard_name="C23H4.6b" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00007694" /db_xref="EnsemblGenomes-Tr:C23H4.6b" /db_xref="GOA:B6VQ85" /db_xref="InterPro:IPR027132" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/TrEMBL:B6VQ85" /db_xref="WormBase:WBGene00007694" intron_pos 26:1 (1/5) intron_pos 61:2 (2/5) intron_pos 432:2 (3/5) intron_pos 548:2 (4/5) intron_pos 1042:0 (5/5) BEGIN 1 MCHANLLIEF DVANKNCFYI GGPNGSGKSA LFAAMNMGLG GRGSDSERGN NVQAYIKDGT 61 TQAKITITLT NEGLNALPEY DELISIERTI NRTASKYTIR NIKVNTHKYK MERVVSTKKS 121 DVDSVVTRLN IHLTNPAFWM SQDRSRSFLA NFKPSTVYKL YLESTNLENI RQSYNRFAES 181 IDHSAELVTA KSEEIANEKR KLKRAQESRV LQLKLEKDRN LLASYRWKFL FCRVRDYDNN 241 IMLNKKKQEV HKKLHKEVKD AYYKNRTERS EVQKKLQELR DEVEVQDEEI KESRADVDNL 301 RKIVNDLKHE IKMSESQMRR KKVEIMLIRK EIAKAQKQLR EALGKFGHEE LTKKLAEAED 361 KRESLNIEIE EIEHVQLKAL RKKYEKLTKE LRNEEEEKFN TRGKIATLRR TIEQDQKILR 421 SMKATKKNDV NKFGPYMSEI LTEIDHRSSQ FKQKPKGPLG KYVTLVEPKW ACATEECFKN 481 IANNFLCCSQ EDAATLRKIF DILKIPSNDR PTIVVSRFTG IKYEDLQQPG YQFKTLYRTL 541 AFSDVDVHNA IIDKSNCEQF LLIEDKTAAM KLMGCDDPPK YAVKAYTPDA SQIFANGLHS 601 QYRFYSSRGK RAVGLFGVNQ KQVDEETLEQ ELEAANRELI RLENHDIKLI EKTLRELTME 661 RSTIKSTIDK LDKKTRELQY ERVKIDRNIN DWKADMTQCA NTEQVDNIND ALGELQEKLS 721 ILEEEAYCIQ DKLDELDEKF QPAIKTKNES EKNYVELQQE VKGYAAQTLS FQKQLRKLDE 781 DGEAGKNRLD KLKSNEDELY HDEARLKSER DEALNIVEKE KVTIERPRRE ADPPDLSEFP 841 STKDARKKII EMHKAISRDA AECGDTVTIG SVKEFKENLK KLRESCRMLE EVVEEMQTVH 901 NGRLKAYPTL KKYTELKVTD KFKELLAIRG HFVGGLEFDH EKENLNVNVH STKEKDALAG 961 KEYSSTDEDE DDEQEFYKNG KPKKKRSKKT KKKPVCDLKG LSGGERSFVT AALVMSLWEV 1021 MEQPFRMLDE FDVFMDMMNR KLVMDLLVEM ATKKFPHNQF IFFTPQGIKE LNRVDGLQIF 1081 EMEKVRD //