LOCUS CAR97805.1 1092 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Protein fantom protein. ACCESSION BX284602-3820 PROTEIN_ID CAR97805.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279421) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="II" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="mks-5" /locus_tag="CELE_C09G5.8" /standard_name="C09G5.8b" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00007490" /db_xref="EnsemblGenomes-Tr:C09G5.8a" /db_xref="WormBase:WBGene00007490" intron_pos 80:2 (1/12) intron_pos 167:2 (2/12) intron_pos 266:0 (3/12) intron_pos 323:0 (4/12) intron_pos 396:0 (5/12) intron_pos 469:0 (6/12) intron_pos 559:0 (7/12) intron_pos 709:0 (8/12) intron_pos 743:2 (9/12) intron_pos 900:1 (10/12) intron_pos 1009:1 (11/12) intron_pos 1066:1 (12/12) BEGIN 1 MSDDESGRST PVIEEKKKPR RKSRKSSHQE PSKNPIPPPR IPDQTEKVLL DKLKVAENDL 61 AMLQEECDLV KKANERLVHQ SLSKSTEYGA RESIEEKKKI VELEELLKET EKRIKESEHR 121 RREDQKKFEA MRLHYKNKYD AAKKTEKKLS VVAKNSKVEE ERIEEEKISH SPPPMTFEPI 181 RKRHSQSEIS RMRRADDDLL QKLYKEVADI LHSHDVGIAE INTLGASENS LARWQKLYSE 241 LYEELEKVRN MLLIQYDINQ KQMKEIKLLK DELDRLKTVS AEILSKSREE VEERQKKIFM 301 LEEQIRTIAY SGQQPVKLLA NQINIPTPRV NTDLSVKLIN VKPSPSLTSK FFFSLEFFDF 361 QLETTPIMDA KQHNMDFTTV YDVLVSNLLI HYLQTNGIVI EMYRPASDCY KLLAAATISL 421 IPLFEDSVLR KFCSEIMLKS VDTGVEMCTL RYEIEVSQPI SDSFKKFKKS EMARNMLPLQ 481 LENEDTEDTN FDPLTIMVNR VVGLDTFGKD PSTEFCIVDE FLSFSPYFTD FSTSSEIRSK 541 RDCYIPKIDI ARNLFATSSI SFFLIENIPR QDGVIATLHL PLHPLCKLGG SIKGTFPMLD 601 TDGRPSSVSL DLCLIWKHEI PSFFLKHEPK EPLKEVKDTP ILPQPVRRTS KEFVVTPVKE 661 AELHDAEPTS MPPKAPEPTT APLRRLSTDS SDTSFSHSSK DLFSPPTNPQ TYDYEIPAVT 721 PALVDSDGEE EADRIVFDDD DDEIESVSAV SSQRDPEPLE VPERQVENLP SPEDTPRPSD 781 PLKPNGTNES KESTPVTQRS VDKTDDVAPV DPELEPESGP EPEPVVESEP NEVAETEEDR 841 KRELKTEELK SLLGALPPIA KPRNIPVGPI ALTEQPEATR QQGSTGRILF TDPLHFSVPP 901 SESSSTSSPR RAEKAPVPLP DYEGHSLIKV RKPLSPTDKD VLEPNMKVSI QLETFELVPG 961 SSLTPLTREE TTFFVDWVFL DFTNEQSKST IFDFPRRPQE MVDIRYTKEY TLTRGQLSLL 1021 DQWIRASIKF ELTIIKISPG DEEELGFGSL ILVPNNTQNK SFVIDVYDRS GIVQAEMTLT 1081 LHFSRALIEQ LT //