LOCUS CAR64682.1 732 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Receptor-type tyrosine-protein phosphatase kappa protein. ACCESSION BX284602-3042 PROTEIN_ID CAR64682.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279421) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="II" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="T13H5.1" /locus_tag="CELE_T13H5.1" /standard_name="T13H5.1d" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00011755" /db_xref="EnsemblGenomes-Tr:T13H5.1d" /db_xref="GOA:G5EGJ3" /db_xref="InterPro:IPR000242" /db_xref="InterPro:IPR000387" /db_xref="InterPro:IPR003595" /db_xref="InterPro:IPR016130" /db_xref="InterPro:IPR029021" /db_xref="UniProtKB/TrEMBL:G5EGJ3" /db_xref="WormBase:WBGene00011755" intron_pos 61:1 (1/16) intron_pos 100:0 (2/16) intron_pos 126:0 (3/16) intron_pos 156:0 (4/16) intron_pos 202:0 (5/16) intron_pos 295:2 (6/16) intron_pos 353:0 (7/16) intron_pos 392:0 (8/16) intron_pos 425:1 (9/16) intron_pos 450:0 (10/16) intron_pos 496:0 (11/16) intron_pos 536:0 (12/16) intron_pos 564:0 (13/16) intron_pos 608:2 (14/16) intron_pos 654:0 (15/16) intron_pos 707:0 (16/16) BEGIN 1 MDALRGSPSP GSSQYIHPER ASQSTGNLNP PQSKKGKRRR KVQKTWQAMS PGNFSKQLQL 61 VQEEKAMQAV PTSPVDASKF VAYVQERRKK RILFKGEYLM VNRSIDNNKC RCDVGSTMMD 121 RNPYPDTLPY DYNRVILPRI DGDENSHYIN ASYVNSWLRD KAYVVTQAVR TKPMNAEFWR 181 MVWELGSNCI VMLTKVFDFM RVMCLQYWPL TKFQFREIEV ETTEVKTYSH FVIRTFKLTR 241 TTPESIETRI VKHFHFTEWE LDSFPYISAF IELRRRVRQF MEKNPVEAPM VVHCSNGAGR 301 SGAFLALDAN LELMKKTGQL DFFEYAKTLV NSRPHLIDSV EQYMFIYEVL SEAVMCNVQP 361 IEMHLLKERS SMYKAKKNRE LLETQETHEN KLLMHLTPTL RIGDCAGGHR LENRGKNRDV 421 MVVPPDHARP YLQTLHGESK DYTYINAVEV DGFTRKAEFI VTEWPKQSTV DSFWTLIYDH 481 ACHTVVNLSN QGSQRHYPSF IHNKGKANYG PFIVEIMNYH QYPAMTSHMV KVMKRTFMIS 541 DIMATGAQNQ QIDAEVRICC VIQVRMWPIE NKVPLSTTGL IDVIKMARSW RKRAPDRPET 601 KPTIVMSHNG VSRVGVYIGA NICIDQMDID HEVDVFHAVK MMRINRPQLI DMKDEYKYLY 661 DVMLHWYMTN PDYRIYDKED SEDTDSQKTS RPPSNRHSIK EKSSFRSKFS FRRRNTTRQN 721 ENNAVDQRVN SN //