LOCUS CAR64665.2 3962 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Ig-like domain-containing protein protein.
ACCESSION BX284606-2297
PROTEIN_ID CAR64665.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="him-4"
/locus_tag="CELE_F15G9.4"
/standard_name="F15G9.4d"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00001863"
/db_xref="EnsemblGenomes-Tr:F15G9.4d"
/db_xref="GOA:G5EDG4"
/db_xref="InterPro:IPR000152"
/db_xref="InterPro:IPR000742"
/db_xref="InterPro:IPR001881"
/db_xref="InterPro:IPR003598"
/db_xref="InterPro:IPR003599"
/db_xref="InterPro:IPR007110"
/db_xref="InterPro:IPR009030"
/db_xref="InterPro:IPR013032"
/db_xref="InterPro:IPR013098"
/db_xref="InterPro:IPR013106"
/db_xref="InterPro:IPR013783"
/db_xref="InterPro:IPR018097"
/db_xref="InterPro:IPR036179"
/db_xref="InterPro:IPR036465"
/db_xref="UniProtKB/TrEMBL:G5EDG4"
/db_xref="WormBase:WBGene00001863"
intron_pos 85:1 (1/44)
intron_pos 120:1 (2/44)
intron_pos 335:0 (3/44)
intron_pos 370:1 (4/44)
intron_pos 477:2 (5/44)
intron_pos 607:0 (6/44)
intron_pos 664:1 (7/44)
intron_pos 936:0 (8/44)
intron_pos 977:1 (9/44)
intron_pos 1052:0 (10/44)
intron_pos 1185:0 (11/44)
intron_pos 1226:0 (12/44)
intron_pos 1487:0 (13/44)
intron_pos 1517:0 (14/44)
intron_pos 1546:1 (15/44)
intron_pos 1608:0 (16/44)
intron_pos 1642:1 (17/44)
intron_pos 1681:0 (18/44)
intron_pos 1717:1 (19/44)
intron_pos 1784:2 (20/44)
intron_pos 1838:0 (21/44)
intron_pos 1868:0 (22/44)
intron_pos 2188:1 (23/44)
intron_pos 2255:2 (24/44)
intron_pos 2382:1 (25/44)
intron_pos 2512:2 (26/44)
intron_pos 2594:0 (27/44)
intron_pos 2700:0 (28/44)
intron_pos 2759:1 (29/44)
intron_pos 2852:1 (30/44)
intron_pos 2890:0 (31/44)
intron_pos 2914:0 (32/44)
intron_pos 2941:1 (33/44)
intron_pos 2968:0 (34/44)
intron_pos 2992:0 (35/44)
intron_pos 3033:1 (36/44)
intron_pos 3084:0 (37/44)
intron_pos 3125:1 (38/44)
intron_pos 3150:0 (39/44)
intron_pos 3193:2 (40/44)
intron_pos 3215:1 (41/44)
intron_pos 3258:1 (42/44)
intron_pos 3665:1 (43/44)
intron_pos 3723:0 (44/44)
BEGIN
1 MGRSPSWLYG VLGLLLLATT CSSVNDDKND PTGKSSLAFV FDITGSMFDD LVQVREGAAK
61 IFKTVMAQRE KLIYNYIMVP FHDPYLGEII NTTDSTYFMR QLSKVYVHGG GDCPEKTLTG
121 ILKALQISLP SSFIYVFTDA RSKDYHLEDE VLNTIQEKQS SVVFVMTGDC GNRTHPGFRT
181 YEKIAAASFG QVFHLEKSDV STVLEYVRHA VKQKKVHLMY EARERGGTVS RNIPVDKHLS
241 ELTISLSGDK DDSDNLDIVL RDPEGRTVDK RLYSKEGGTI DLKNVKLIRL KDPSPGVWTV
301 NTNSRLKHTI RVFGHGAVDF KYGFASRPLD RIELARPRPV LNQDTYLLIN MTGLIPPGTV
361 GEIDLVDYHG HSLYKAVASP HRTNPNMYFA GPFVPPKGLF FVRVQGYDED NYEFMRIAPT
421 AIGSVIVGGP RAFMSPIHQE FVGRDLNLSC TVESASAYTI YWVKTGEDII GGPLFYHNTD
481 TSVWTIPELS LKDAGEYECR VISNNGNYSV KTRVETRESP PEIFGVRNVS VPLGEAAFLH
541 CSTRSAGEVE IRWTRYGATV FNGPNTERNP TNGTLKIHHV TRADAGVYEC MARNAGGMST
601 RKMRLDIMEP PSVKVTPQDV YFNMREGVNL SCEAMGDPKP EVHWYFKGRH LLNDYKYQVG
661 QDSKFLYIRD ATHHDEGTYE CRAMSQAGQA RDTTDLMLAT PPKVEIIQNK MMVGRGDRVS
721 FECKTIRGKP HPKIRWFKNG KDLIKPDDYI KINEGQLHIM GAKDEDAGAY SCVGENMAGK
781 DVQVANLSVG RVPTIIESPH TVRVNIERQV TLQCLAVGIP PPEIEWQKGN VLLATLNNPR
841 YTQLADGNLL ITDAQIEDQG QFTCIARNTY GQQSQSTTLM VTGLVSPVLG HVPPEEQLIE
901 GQDLTLSCVV VLGTPKPSIV WIKDDKPVEE GPTIKIEGGG SLLRLRGGNP KDEGKYTCIA
961 VSPAGNSTLH INVQLIKKPE FVYKPEGGIV FKPTISGMDE KHVAVVNSTH DVLDGEGFAI
1021 PCVVSGTPPP IITWYLDGRP ITPNSRDFTV TADNTLIVRK ADKSYSGVYT CQATNSAGDN
1081 EQKTTIRIMN TPMISPGQSS FNMVVDDLFT IPCDVYGDPK PVITWLLDDK PFTEGVVNED
1141 GSLTIPNVNE AHRGTFTCHA QNAAGNDTRT VTLTVHTTPT INAENQEKIA LQNDDIVLEC
1201 PAKALPPPVR LWTYEGEKID SQLIPHTIRE DGALVLQNVK LENTGVFVCQ VSNLAGEDSL
1261 SYTLTVHEKP KIISEVPGVV DVVKGFTIEI PCRATGVPEV IRTWNKNGID LKMDEKKFSV
1321 DNLGTLRIYE ADKNDIGNYN CVVTNEAGTS QMTTHVDVQE PPIILPSTQT NNTAVVGDRV
1381 ELKCYVEASP PASVTWFRRG IAIGTDTKGY VVESDGTLVI QSASVEDATI YTCKASNPAG
1441 KAEANLQVTV IASPDIKDPD VVTQESIKES HPFSLYCPVF SNPLPQISWY LNDKPLIDDK
1501 TSWKTSDDKR KLHVFKAKIT DSGVYKCVAR NAAGEGSKSF QVEVIVPLNL DESKYKKKVF
1561 AKEGEEVTLG CPVSGFPVPQ INWVVDGTVV EPGKKYKGAT LSNDGLTLHF DSVSVKQEGN
1621 YHCVAQSKGN ILDIDVELSV LAVPIVGEDD NLEVFLGKDI SLSCDLQTES DDKTTFVWSI
1681 NGSESDRPDN VQIPSDGHRL YITDAKPENN GKYMCRVTNS AGKAERTLTL DVLEPPVFVE
1741 PVFEANQKLI GNNPIILQCQ VTGNPKPTVI WKIDGNDVDK SWLFDESLSL LRIEKLTGKS
1801 AQISCTAENK AGTASRDFFI QNIAAPTFKN EGDQETIFRE SETITLDCPV SLGDFQITWM
1861 KQGLPLTEND AIFTLDNTRL TILNANRDHE DIYTCVANNT AGQVSKDFDV VVQVLPKIKN
1921 AVVTLEINEG EEIILTCDAE GNPTPTAKWD FNQGDLPKEA VFVNNNHTVV VNNVTKYHTG
1981 VYKCYATNKV GQAVKTINVH VRTKPRFESG LTESELTVNL TRSITLECDV DDAIGVGISW
2041 TVNGKPFLAE TDGVQTLAGG RFLHIVSAKT DDHGSYACTV TNEAGVATKT FNLFVQVPPT
2101 IVNEGGEYTV IENNSLVLPC EVTGKPNPVV TWTKDGRPVG DLKSVQVLSE GQQFKIVHAE
2161 IAHKGSYICM AKNDVGTAEI SFDVDIITRP MIQKGIKNIV TAIKGGALPF KCPIDDDKNF
2221 KGQIIWLRNY QPIDLEAEDA RITRLSNDRR LTILNVTEND EGQYSCRVKN DAGENSFDFK
2281 ATVLVPPTII MLDKDKNKTA VEHSTVTLSC PATGKPEPDI TWFKDGEAIH IENIADIIPN
2341 GELNGNQLKI TRIKEGDAGK YTCEADNSAG SVEQDVNVNV ITIPKIEKDG IPSDYESQQN
2401 ERVVISCPVY ARPPAKITWL KAGKPLQSDK FVKTSANGQK LYLFKLRETD SSKYTCIATN
2461 EAGTDKRDFK VSMLVAPSFD EPNIVRRITV NSGNPSTLHC PAKGSPSPTI TWLKDGNAIE
2521 PNDRYVFFDA GRQLQISKTE GSDQGRYTCI ATNSVGSDDL ENTLEVIIPP VIDGERREAV
2581 AVIEGFSSEL FCDSNSTGVD VEWQKDGLTI NQDTLRGDSF IQIPSSGKKM SFLSARKSDS
2641 GRYTCIVRNP AGEARKLFDF AVNDPPSISD ELSSANIQTI VPYYPVEINC VVSGSPHPKV
2701 YWLFDDKPLE PDSAAYELTN NGETLKIVRS QVEHAGTYTC EAQNNVGKAR KDFLVRVTAP
2761 PHFEKEREEV VARVGDTMLL TCNAESSVPL SSVYWHAHDE SVQNGVITSK YAANEKTLNV
2821 TNIQLDDEGF YYCTAVNEAG ITKKFFKLIV IETPYFLDQQ KLYPIILGKR LTLDCSATGT
2881 PPPTILFMKD GKRLNESDEV DIIGSTLVID NPQKEVEGRY TCIAENKAGR SEKDMMVEVL
2941 LPPKLSKEWI NVEVQAGDPL TLECPIEDTS GVHITWSRQF GKDGQLDMRA QSSSDKSKLY
3001 IMQATPEDAD SYSCIAVNDA GGAEAVFQVT VNTPPKIFGD SFSTTEIVAD TTLEIPCRTE
3061 GIPPPEISWF LDGKPILEMP GVTYKQGDLS LRIDNIKPNQ EGRYTCVAEN KAGRAEQDTY
3121 VEISEPPRVV MASEVMRVVE GRQTTIRCEV FGNPEPVVNW LKDGEPYTSD LLQFSTKLSY
3181 LHLRETTLAD GGTYTCIATN KAGESQTTTD VEVLVPPRIE DEERVLQGKE GNTYMVHCQV
3241 TGRPVPYVTW KRNGKEIEQF NPVLHIRNAT RADEGKYSCI ASNEAGTAVA DFLIDVFTKP
3301 TFETHETTFN IVEGESAKIE CKIDGHPKPT ISWLKGGRPF NMDNIILSPR GDTLMILKAQ
3361 RFDGGLYTCV ATNSYGDSEQ DFKVNVYTKP YIDETIDQTP KAVAGGEIIL KCPVLGNPTP
3421 TVTWKRGDDA VPNDSRHTIV NNYDLKINSV TTEDAGQYSC IAVNEAGNLT THYAAEVIGK
3481 PTFVRKGGNL YEVIENDTIT MDCGVTSRPL PSISWFRGDK PVYLYDRYSI SPDGSHITIN
3541 KAKLSDGGKY ICRASNEAGT SDIDLILKIL VPPKIDKSNI IGNPLAIVAR TIYLECPISG
3601 IPQPDVIWTK NGMDINMTDS RVILAQNNET FGIENVQVTD QGRYTCTATN RGGKASHDFS
3661 LDVLSPPEFD IHGTQPTIKR EGDTITLTCP IKLAEDIADQ VMDVSWTKDS RALDGDLTDN
3721 VDISDDGRKL TISQASLENA GLYTCIALNR AGEASLEFKV EILCTSLATV KCREHENNYI
3781 ARHMPHVVTK PREMSQSANA YREHMRKYKE YLQKYEEGLQ RQRNENIRRQ NEYWEMRRKK
3841 ESFSSVTSTT TTTSTTTTTP RPTTTTFIST TTTTVKPPMP WIYNPKFGHP TGANGVMNVK
3901 ATVQHPTRKF RTKRVKPVLR CFLYDPFRHV FLREKSAESL PPTKKGFLKY PLNINRKRVK
3961 RL
//