LOCUS CAQ58108.1 1878 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans 1-phosphatidylinositol 4,5-bisphosphate
phosphodiesterase epsilon-1 protein.
ACCESSION BX284606-2566
PROTEIN_ID CAQ58108.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="plc-1"
/locus_tag="CELE_F31B12.1"
/standard_name="F31B12.1e"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00004036"
/db_xref="EnsemblGenomes-Tr:F31B12.1e"
/db_xref="GOA:G5EFI8"
/db_xref="InterPro:IPR000008"
/db_xref="InterPro:IPR000159"
/db_xref="InterPro:IPR000909"
/db_xref="InterPro:IPR001192"
/db_xref="InterPro:IPR001711"
/db_xref="InterPro:IPR001895"
/db_xref="InterPro:IPR011992"
/db_xref="InterPro:IPR015359"
/db_xref="InterPro:IPR017946"
/db_xref="InterPro:IPR023578"
/db_xref="InterPro:IPR028398"
/db_xref="InterPro:IPR029071"
/db_xref="InterPro:IPR035892"
/db_xref="InterPro:IPR036964"
/db_xref="UniProtKB/Swiss-Prot:G5EFI8"
/db_xref="WormBase:WBGene00004036"
intron_pos 26:1 (1/30)
intron_pos 120:0 (2/30)
intron_pos 190:0 (3/30)
intron_pos 287:1 (4/30)
intron_pos 329:1 (5/30)
intron_pos 408:0 (6/30)
intron_pos 469:0 (7/30)
intron_pos 519:0 (8/30)
intron_pos 575:1 (9/30)
intron_pos 601:2 (10/30)
intron_pos 690:1 (11/30)
intron_pos 761:2 (12/30)
intron_pos 808:1 (13/30)
intron_pos 839:2 (14/30)
intron_pos 880:0 (15/30)
intron_pos 956:0 (16/30)
intron_pos 993:0 (17/30)
intron_pos 1072:1 (18/30)
intron_pos 1107:2 (19/30)
intron_pos 1183:0 (20/30)
intron_pos 1234:0 (21/30)
intron_pos 1334:0 (22/30)
intron_pos 1425:0 (23/30)
intron_pos 1535:2 (24/30)
intron_pos 1568:0 (25/30)
intron_pos 1647:0 (26/30)
intron_pos 1676:0 (27/30)
intron_pos 1736:1 (28/30)
intron_pos 1779:0 (29/30)
intron_pos 1810:1 (30/30)
BEGIN
1 MNWDTLKGVL KTRRLTKRTI PAYIHPTSRS DSTSSTQSAT AGFILNEEPI TLFRLELERL
61 QYILHFPEEV AFQLSSTEYQ LFYSIQPMDY VRYVSCDLTS VPVSENPSPV RNLVKRLSEV
121 SSWITHVIVS QPTHDDRKVA LTAILRIVET CWNIGNFNAA VEVLMGLKSE KLRPFWLSLR
181 QEEKSQFDSL CETLLPANQA LPSQAYINAV QRALRMPQSR VIPFFGIFLR DLYAIVNDLP
241 NIVVIGQEGE TQKLEFMSDP NGEDHFSSRI GVGGLLNADK INLVAIVLDN LELFHRHSRT
301 MIKLLEEQAV PPIQIPQNER EQKEKEAKTY EPVQVVRGSS HGVALIPLDT LTFDLDVIQR
361 LQHGTTVIHY EPDSGRSNLC LLRLDPSCGQ INWHKISYSV NKDPKEKDVL AKVSVSNLQP
421 LDSGRGAPSP MPSGRTPGTG GVGVEEGELK LSVVKGVELV DSYDIDIEAI YRRHSMEEMS
481 VPVSCWKVSH GQLLSDNEFI YFLAPQQIAQ FWTNGLQSVV KSLQGQQRYP DRRMLWIKNV
541 YLSLYEITGE SNCGPRPFEA LQAFGGRVER WKGFGLSQTN TNATRPNDSS LSSEPGGAKS
601 RLKNLKNAMQ KKLRGASREG SRSQSPQPHS PLVRPPSIKS QISSQSGPPG PNSPGYLLKP
661 RGEPANSDAG DIDSIYTPRS RTPTSSSYGG RSVGGRSCKS WRSRGGETPN SGSISSSGQM
721 SIQVSGLSGP SGKEFQEKPL TLVEFAELFR LFNTRMRKDL RDVFNDVLST ATTPQHCPKR
781 ERDRHSPRMQ SRLASVSNSY NADFLSNDFL TRNTAVTSHH ISEKQNKIYN ALALASVNSM
841 GGLMDTSRSS MLTPQMLRAF VNTHQMEQID EQTAIKLIQD HEPDGICRQK NQMSFEGFTR
901 FLCDPVNFAF VPETIEPDEE DLRYPLSHYY INSSHNTYLT GHQLKGPSSS EMYRQVLLTG
961 CRCVELDCWD GDDGLPLIYH GHTLVSKIGF RQVVEIIKKS AFITSDLPVI LSIENHCSLQ
1021 QQAKMAQMFK TVLGDLLVSN FLFEADFSDS PRLPCPLQMK NKILIKNKKM IVDPPTPLPM
1081 IERGAVQRGE TQLNLHRKQS KNSYESSTVD EVEDDDLDEF LDDEENEEDD QEEVQVRSEK
1141 EDSPKTSKRA EKSARNIKQQ DSLCSDHSVE QAKPSTSKTT SKTNDRKTED EVLYAQLAQN
1201 AIRNQQPRKN NTGVQIAPEL SDIVIYMQAT KFKGFPPVDG IQSPRIMEEG PASASLSFSS
1261 RARTPSNLLN TPAPPRRQRS STQLSQELAA EFLGSVRANA TATCYQVTSL NENAAKKLMK
1321 RHPAKCVSYT RDHLIRTYPS AKHYDSSNFN PINCWAHGMQ MVALNFQTPD VIMAVNQAMF
1381 EQSGNCGYQL KPRCLWDESH LLYNKFLPLS KDIAGHSALL LNLTIISGQH VYPNTHYASL
1441 YVEIEVIGIH NDCVREKSKV VQRNSVNPIW NHTTQLRIAC VDLAFLRIAV CDSGQNGRVV
1501 AHRVVPVKCI RPGFRHLPLR TPTNLPIDNA MIFLRTRFEQ EEHIYLHDDD SNTYCNLEHT
1561 LAYRTDLTPN LSPTPILKKQ IFVLRITGAF ADETAITVHS ESGSTVKTVM QQALLNAGKN
1621 ADQVEEYVLI EESLPAPSGE DPIEQRVLPL NEPIMDAVAC WNGSMRRFVL RKKGSDPSSR
1681 AWITSIIKSG TSGSSTSVSP SPLTKDGHVK SASSNQLHGR SLDTDAFGEH LEVTEGLNPR
1741 ARSMGDTFLV CVHNVSEDQP YAILRAGIHS TAADIIRQVF VKARRSNVDD SEFVLVEETC
1801 DDPKLNQGQM TPKYPNNRTT SRVLGQNENV WKAQSRWKSM GRFVLENRKD TVHATLEKVR
1861 SFISKLEAAK ASMDPRHE
//