LOCUS CAQ16134.1 802 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Pyridoxal-dependent decarboxylase domain-containing protein 1 protein. ACCESSION BX284606-2414 PROTEIN_ID CAQ16134.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="C14H10.3" /locus_tag="CELE_C14H10.3" /standard_name="C14H10.3a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00007593" /db_xref="EnsemblGenomes-Tr:C14H10.3a" /db_xref="GOA:B1Q254" /db_xref="InterPro:IPR015421" /db_xref="InterPro:IPR015424" /db_xref="UniProtKB/TrEMBL:B1Q254" /db_xref="WormBase:WBGene00007593" intron_pos 23:2 (1/11) intron_pos 57:0 (2/11) intron_pos 114:2 (3/11) intron_pos 166:2 (4/11) intron_pos 217:0 (5/11) intron_pos 262:0 (6/11) intron_pos 359:0 (7/11) intron_pos 492:0 (8/11) intron_pos 528:1 (9/11) intron_pos 585:2 (10/11) intron_pos 735:1 (11/11) BEGIN 1 MATSAEMSGT VQQIESIIQT IESKIDVSSQ QHSPASNSSS TKSEDSGLDD GPKKSVTSAK 61 PISRKSSRMS QSSGVSLPPV LEQLEHMIIS DDWLGSESTS PSGLKQHAQV AKTRSREGQK 121 LSELGRTLVT SASLKSYIDL LSSHHRQSIA SWLYGNVNHV FSNLFRFADS QIYCSDPEAT 181 ISLSIRNGIG HAVKLALKSS YGTDHSTKGW RAFAEQGAPV VYVSPALHMD LSSYLASEFG 241 IADVTILPKL DSDRGEIEGR IDHHQFEKIL DEDLAAGKKP LILIGVVGTT IMGQNDMISK 301 ILEIREKKAK FWLHITGQAI AALTFREPNN ILVHVLSQVD SMTVPIALWL GIPSAPVVTL 361 HRPVEGYKAS YREKLDTLPW WVASSYLSGK KIVDMIENAF LLSKVMLKGL SAIPEVEMIG 421 VDNPVELANR VYKNKFTPPT VLIFKYNYVS IKNAIQHHKD LIQNNDDHDA IAIAEKTLQD 481 ELEYGDYLNA WLRDGLLPES LPLGIDTIEL GGNYGIAFRF CPLEHAATYS SHIDHVQRFV 541 RKLTDIMRIV ESTVVSKLKF SELKDDFPSL VLLPIRNWAG IGAVCYIPSI VKETNPEDWN 601 DIQKQQISHL NLELVHQLKS VDAAFSSGDC TRYGVSCVKF GMLSDVKDLH NLVEMVAQKG 661 KEIENSQQYL DSLAHLIRQG IEAANEALRK ENDQRLQNEG MMRQLPIMGS LVNWWSPLTP 721 ESQNIRGRAF NLKTGEMQET DVLFKSKKNM DATPPITKNE TPQIPHEPFA TKIDEEPTSE 781 SETAVTEEAV SSAEEAKPVE SS //