LOCUS CAP16280.1 920 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Aspartyl/asparaginy/proline hydroxylase
domain-containing protein protein.
ACCESSION BX284606-3724
PROTEIN_ID CAP16280.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="K09A9.6"
/locus_tag="CELE_K09A9.6"
/standard_name="K09A9.6b"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00010703"
/db_xref="EnsemblGenomes-Tr:K09A9.6b"
/db_xref="GOA:A8WHT8"
/db_xref="InterPro:IPR007803"
/db_xref="InterPro:IPR011990"
/db_xref="InterPro:IPR013026"
/db_xref="InterPro:IPR019734"
/db_xref="InterPro:IPR027443"
/db_xref="InterPro:IPR039038"
/db_xref="UniProtKB/TrEMBL:A8WHT8"
/db_xref="WormBase:WBGene00010703"
intron_pos 66:1 (1/13)
intron_pos 89:0 (2/13)
intron_pos 122:1 (3/13)
intron_pos 152:2 (4/13)
intron_pos 187:1 (5/13)
intron_pos 219:0 (6/13)
intron_pos 434:0 (7/13)
intron_pos 480:2 (8/13)
intron_pos 513:0 (9/13)
intron_pos 578:2 (10/13)
intron_pos 658:0 (11/13)
intron_pos 825:0 (12/13)
intron_pos 886:0 (13/13)
BEGIN
1 MYANSAQQCF KNTDSPYGSV KLRHVNYGEE TVGRPLSSYN RLSRRFNRES ISNFSDLSAT
61 YYENYSGVNP VLTVALTPVP KVDYSVTKGG ARTWIVLLVF IFLCSSLYTI FSAKDAGDSH
121 HDLSSHSSAD DDDVPAYNHP GSATEDDDDD DDDDEPPTPS PRVSKKQEQQ TTQQKTTQPA
181 AAQVTDSDDE DDEESNEHTL GGRLFAGLRK KITDRLNEKA VKEEPKSKND QILNPRELRK
241 LKKQQKTAKV EVVEDDDDDD DEDDDDVEAP APQEPSRKQK AHNQREEKKD KNKKYQPVKE
301 EPDLDDDDDD EDDDDDDGDD DDDEKDDGND AEKDDGDDDD DDDDGNDDDE EDGKNKKTSV
361 EAKSDKVVEE KNDGDDEPHV SHREAQRLRR QHLRESRRDN RPRQGGNREC IHQDCPNRES
421 LKPRKSLLVT KKKTKSMVER ILDDEFDDED DDDEDDDSEV NKNDREDDDE DDVDERISDR
481 DSSSSYKRHA ITTKEEIGFR DILDRADNLV EKHQYEEAME LFDHVIAVYP ASTRAYFGKA
541 RAYDIRGEIE ADETDRDKAI EIYEKILQNS GVPDALFRQA AQRLIEKTRF RGQLHKTLTA
601 HRYFIDRFPE ELNLQTDFAI SFVMMKRYED ARTVLKNVLA NDPNHVIALA YYGYILKAHD
661 DKVEQGVALM RKSLKNADNE ITDPKFYYQL GHGLTTLGRK SEADAVYQKA AQMGVFMTAQ
721 QRSLYNIEGL TGRAWWAMDQ TPYSKFLKTV ERQWATIRQE GMEVLKDCSD CWLDHNQQLV
781 IDGQWKFFPI MSEQNFIKSS CERMPQTCLI LQEFAASSNA SKSDMHLSVL SSGASILPHC
841 GPTNYHLQAH LGLVSPSEAR IRVGNETKGW RSGKFIIYDD SFEHELQFDG ASSSSFRLVL
901 TIQLWHPEVQ PHQRVLSFLS
//