LOCUS CAJ55250.1 509 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Mitogen-activated protein kinase sma-5 protein. ACCESSION BX284606-2900 PROTEIN_ID CAJ55250.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="sma-5" /locus_tag="CELE_W06B3.2" /standard_name="W06B3.2c" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Tr:W06B3.2c" /db_xref="GOA:G5EBT1" /db_xref="InterPro:IPR000719" /db_xref="InterPro:IPR008271" /db_xref="InterPro:IPR011009" /db_xref="InterPro:IPR017441" /db_xref="UniProtKB/Swiss-Prot:G5EBT1" /db_xref="WormBase:WBGene00004859" intron_pos 10:0 (1/8) intron_pos 71:1 (2/8) intron_pos 131:0 (3/8) intron_pos 184:1 (4/8) intron_pos 221:0 (5/8) intron_pos 376:0 (6/8) intron_pos 428:0 (7/8) intron_pos 467:1 (8/8) BEGIN 1 MVFADFLEKI KSLFAKTKDP ITSMSPPQEN RSPKAEYLNN FFNTNPTNGK SRGSQEAPRK 61 PLGQTNLNVQ GSMPAKKEGF NRVLDGLKKR QLQHDFKLER AAETYEPTQN IGSGAFGIVC 121 EAVETSSNQK VAIKKVAHAS ATPTLARRTL REIRVLRYIN HPNIVPLRDI FRTKGPLGID 181 VFLVMDLMQN NLHHIIYGNE DPLEEHYINA FLGQLLRGLE YLHAACIAHR DLKPSNLLVN 241 QDGTLRIADF GMAKCADNSS KKHDDEEHCY YMTQHVATLP YRAPELLFVL PEHSTAVDMW 301 AVGCIFGEMV IRNEILPGRS VQGQIKMLLT MLGQPPQEVI NEVRCDRTRK LIQDFGRKAD 361 AEWDDIMFCK ARGDDQIVRG NCDTIDFVKQ LFQYDAQKRI NIQDALLHPY IQRVIPAEAP 421 QKKCPFRVKK DMMQVEDLNH QELISMMKQD VRSAENPITY SELHSGDSTG STSDMSTNTS 481 GEYSPIAQHE QLLEDVATQI SICEPTCDL //