LOCUS CAH2193562.1 576 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Ig-like domain-containing protein protein. ACCESSION BX284606-571 PROTEIN_ID CAH2193562.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="igcm-3" /locus_tag="CELE_T02C5.3" /standard_name="T02C5.3e" /note="Confirmed by transcript evidence" intron_pos 54:0 (1/10) intron_pos 80:1 (2/10) intron_pos 116:2 (3/10) intron_pos 160:2 (4/10) intron_pos 203:1 (5/10) intron_pos 384:0 (6/10) intron_pos 436:2 (7/10) intron_pos 483:1 (8/10) intron_pos 498:2 (9/10) intron_pos 525:0 (10/10) BEGIN 1 MHGTPTKEAI YCVSEAPVSQ LRFVCTDCLE KNITDMVNVL NSAQDITRRV GFPAVTLKDI 61 AVNTNWTGAT IMCQAALNGG TVDSSPATVD VRYLRQPHVV DSNGQSPVLI GNQGYRFFVE 121 CVRGADGLCQ QSGRRKTLKC DVQSNPPATQ YRWLKNGSPS GTGAEITIGT EMIGQSIQCQ 181 ANNGLHDESN MPLSQAVQID PYSSAKLLKD NFQKLQSTSP FLASNRIEMN QQVNMGCEVE 241 GNPRPIVYWR MRKPNGDVVD AACPQGLEGQ YQELPPEGGR SANIVRLTAL CSLRISNYSY 301 SGQYWCAACS QVSQGEPECS PSLETPGTSS LNVQVIGAPS NSDAPPSIEQ RGNDATVLVH 361 YCAEPMPRPP REIVFSIDQN DLQVGQSWEN FRFDSAVTNN TVPNCYIARL SISPVREEDQ 421 YRRIALKLQN QFGSKQIPVS MDALLGGDSA MVGRMPTFWM YILIGVAALL FVICIIAVCV 481 RRRVKDHPDY NEPKTKANLN IHQENDYFEP PPNAPRLFAQ HPPEKKRTTV AAFHEGVNYA 541 ELELKRGFAA QPSSTVSISS VNSRPHRGTA SVQSVV //