LOCUS CAH2190574.1 1726 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans EGF-like domain-containing protein protein.
ACCESSION BX284606-1743
PROTEIN_ID CAH2190574.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="chts-1"
/locus_tag="CELE_F48E3.8"
/standard_name="F48E3.8h"
/note="Confirmed by transcript evidence"
intron_pos 37:1 (1/27)
intron_pos 79:1 (2/27)
intron_pos 136:1 (3/27)
intron_pos 215:1 (4/27)
intron_pos 238:1 (5/27)
intron_pos 264:2 (6/27)
intron_pos 302:1 (7/27)
intron_pos 364:1 (8/27)
intron_pos 423:1 (9/27)
intron_pos 478:1 (10/27)
intron_pos 522:1 (11/27)
intron_pos 563:1 (12/27)
intron_pos 606:1 (13/27)
intron_pos 730:0 (14/27)
intron_pos 780:1 (15/27)
intron_pos 864:1 (16/27)
intron_pos 947:1 (17/27)
intron_pos 1002:1 (18/27)
intron_pos 1105:1 (19/27)
intron_pos 1237:1 (20/27)
intron_pos 1280:1 (21/27)
intron_pos 1320:1 (22/27)
intron_pos 1362:1 (23/27)
intron_pos 1391:2 (24/27)
intron_pos 1519:1 (25/27)
intron_pos 1647:0 (26/27)
intron_pos 1695:0 (27/27)
BEGIN
1 MNEKRRCISE NTECIDEICM CASFYKAVDG VCVTEKSKTL TQQCRIDSDC RGPGEFCSSF
61 SICMCRSSHV DVGTQCKPVI YPGQHGCEDS IQCNKGFPGA NCDVNRNCVC PVGFLAIQQT
121 CVSNQQAAHH PPIRNEIMLQ NEIMADHRTI NQSFRGNFFR RRNYDGPRAY QIAPDLTCSY
181 DNQCAGYPLA ICHSVCQCVK GALNTGTTCI ASSTAIQTSV ACPAGQTYIR EAGVCMTVQQ
241 PGEPCQYSQQ CSALEPGAYC LKMRCECVYG MKKSSNGCTF VNNDCKERGH IFISEIGECR
301 EVFPPGGKGC SHNLQCSGAY PDATCFMQTC TCPPNLPVAA DGTCGRSCPN NQVYSGVTGE
361 CLPEKQPGQD CIYSSQCQAS FGGLVCDKNT CRCPNGLVFD GLKCSHGCPP HKRVIDKEIC
421 VEGCPSGIVE VAGRCVKQVS IGQPCVANAQ CNFGSFCQSG TCQCPPGFYV QDEQCQAIES
481 EPNESCQNNE KCTKGSVCYN GKCSCPRNHE LINGHCQQNR AAAHAYNTAL ENIRKIRLRF
541 ASQSKSRNSS PQLTDVENDN DTVPIGSACV RIGVTCDGGS VCVAGICVCP LGKTPRNGVC
601 IEHVAARPGT SCQNEEECVD HSYCSPETNK CECMKASQMV IGGECRERLK AHPGYGCTMG
661 EMCVGNSVCV NGKCACVDGK VEINKICIDQ VSAKPGDTCG KGIICEGGSY CNTDSGKCAC
721 RRGENSINGI CKGFTFVYPG DLCTDITSRC TGGSYCARGR CECPPRMSAI DKKCVHQQTA
781 APGEPCSEKV ACSPFSVCEN NVCKCVNNMM IRDKMCVQRR KVNIGNSCNN EDQCLGNSTC
841 MDNNCQCGIG FVASMDVCVL RKTVTPGYLC NPEDICTGQS VCIKGVCQCQ PDYKQMHNIC
901 VKKNIGIEGS PCSSRDDCGE GLMCGASGKC SCPEGLFSVN GKCRSYVQLG QTCTSDDRCA
961 ERNAQCQENY CTCRTGYTNI NGQCAANIVT PAEPETLSQV KSGLLGHICT SNDHCKIAHS
1021 QCRRNVCQCI DGYRIFGSTQ CIPRPGKPKE RKTEKESKLV ELGDKCDKLS LCSKGAICEK
1081 GVCSCPETFF ESDGACVKNV AKIKVVVPPL SSCLGGEECS GNSECVHGIC FCKEEFTLFE
1141 GKCQRLRIIE KLTVLESKKL IKPIKAHTTP TAASNTTPIP VKTTTTLQTT TATTLPENYV
1201 SSSTNRPLTP IIISMKLGST SSPSPQITSN PEYKWRLSKP GHMCDNKTHC TNCSVCVNGF
1261 CRCPEGLVHY GDKCVSEIDA TKCLASNQCP SGAQCVKGEC RCKPGLGITR YGFCVPITFA
1321 EPGTSCAYGE HCQKDSHCED GLCTCNEPLV LKENKCVVSP REQTRRRQPS RLLTECPRDG
1381 SCRLPSCFCT STGKIPPNNF DTKQVPQMVM LSFDDPITDR IINTLKSLFS GSIRNPNGCA
1441 IKGTFFVSHQ WNNYDQSLWL HSTNHEIGVN SITREDLSGR TQERWYKEQK GMRETLAEFS
1501 FIDRSHIIGT RAPELKIGGD AQYRMMSENN FTFDNSMLVS SPYWPQTLDH KLAWECDGNC
1561 PTQSHKAIWE IPIQNIQAND TRWYKTLTRA MKPFDSRDSV TKMLQRNFMN HYKTNRAPFI
1621 LTLDTEFLTY LPDNGAVYAL RDFLKFIVQK QDVFVVTGSQ IIDYMRNPVD LNNIKSLRSW
1681 QCKPQMKDEA NPCENPTTCS FSGRARGQFA HSFRMCGVCP KSYPWI
//