LOCUS CAG8860236.1 973 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans CBS domain-containing protein protein. ACCESSION BX284602-4183 PROTEIN_ID CAG8860236.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279421) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="II" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="clh-1" /locus_tag="CELE_T27D12.2" /standard_name="T27D12.2c" /note="Partially confirmed by transcript evidence" intron_pos 67:2 (1/17) intron_pos 110:2 (2/17) intron_pos 129:2 (3/17) intron_pos 179:1 (4/17) intron_pos 219:1 (5/17) intron_pos 263:1 (6/17) intron_pos 308:0 (7/17) intron_pos 362:1 (8/17) intron_pos 434:2 (9/17) intron_pos 468:2 (10/17) intron_pos 681:2 (11/17) intron_pos 760:2 (12/17) intron_pos 775:2 (13/17) intron_pos 818:0 (14/17) intron_pos 839:0 (15/17) intron_pos 875:0 (16/17) intron_pos 936:1 (17/17) BEGIN 1 MRRNSPRATI LFAVNPDKGA FPLLMTLPYE NYNNQATTSS ADTSGTTTTD LTSRRLESIA 61 EDGSILKMED AVVVDEEHRR RGEDTQSSGQ SSLPSDIVQF TARPHMLMED VECSPIEPTE 121 KEWNEYRDRV QENADQMELL GDDESSDTED QNDLDEEYED YYTDSKSTRR ETTKEFLTRQ 181 FQNIVHFFVE DWFISAALGF ITAIFSIFID MGIEYLIHFR NFMLESLEQF NNYAAFCGWV 241 FYITGLVYLA ALVCYGFGKQ AVGSGIPEVK VIIHGFQLKN YLSGKTLIAK MIGLTLTIGS 301 GLPVGKEGPF VHIGAIVASL LNKVTAACQY NAFFSNEGRA MEMLSIGCAV GIACTFSAPM 361 GAVLYGIEST SKYFAVKNYW RSFFATTCSA MLFRFAIAFF VPQHIAGTIT AYYQTYFPNE 421 VFVVEELPFF IGLGVMTGLL GALFVYYHRR IAFFKRKNRI FQALFGKSPI LFTACCAAIF 481 AVLVYPNGLG SYVAGKYTFR ETLVDFLSNC TLWKQTNGSE GCPPHMLEHW SGPEGDMMPI 541 NSLLIYFLFY FIIVPICITL YIPSGIFVPC FVIGACGGRI FGEIISMIWP YGLRGLGQPQ 601 IYPGLYAVVG AASFTGSVTH SLSIALIVCE TTGQLCALLP VLIALMISNA ICAFLQPSIY 661 DSIIKINGYP YLADLPPSRM SVHQMKVERI MVKDIFYITR ETTYRELREM LLESPTLRSY 721 PFVTDSRSMT LLGSVARKYL LYLIQRKLGP EPELFGHRRR SRTASEIFST INNLRKYSRR 781 GSLAANGAHM SSGNALMTDR NISGNTLLPQ SPLHEDQGDR SPLAPLLYAQ TNQHEPIVHS 841 LAKRAEILSK KLDMEEVAID PAPFQLVRGT SLYKVHTLFS LLALNHAYVT EKGRLCGVVA 901 VKELREALSN IYSRGAVVPK QRIRTSTFRL NPEQDLDREL QNGHTAEPNG APIRQPRVTI 961 DVPENAKTDD ETR //