LOCUS CAF31492.2 2209 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Transcription factor sma-9 protein.
ACCESSION BX284606-2543
PROTEIN_ID CAF31492.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="sma-9"
/locus_tag="CELE_T05A10.1"
/standard_name="T05A10.1e"
/note="Partially confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00004862"
/db_xref="EnsemblGenomes-Tr:T05A10.1e"
/db_xref="GOA:Q7JM43"
/db_xref="InterPro:IPR003604"
/db_xref="InterPro:IPR013087"
/db_xref="InterPro:IPR036236"
/db_xref="UniProtKB/TrEMBL:Q7JM43"
/db_xref="WormBase:WBGene00004862"
intron_pos 189:0 (1/25)
intron_pos 241:0 (2/25)
intron_pos 420:1 (3/25)
intron_pos 571:0 (4/25)
intron_pos 596:1 (5/25)
intron_pos 733:0 (6/25)
intron_pos 779:0 (7/25)
intron_pos 852:0 (8/25)
intron_pos 1359:2 (9/25)
intron_pos 1394:2 (10/25)
intron_pos 1435:0 (11/25)
intron_pos 1467:2 (12/25)
intron_pos 1506:1 (13/25)
intron_pos 1542:2 (14/25)
intron_pos 1616:1 (15/25)
intron_pos 1669:0 (16/25)
intron_pos 1761:0 (17/25)
intron_pos 1810:2 (18/25)
intron_pos 1858:1 (19/25)
intron_pos 1927:0 (20/25)
intron_pos 1980:0 (21/25)
intron_pos 2013:2 (22/25)
intron_pos 2095:0 (23/25)
intron_pos 2142:1 (24/25)
intron_pos 2188:0 (25/25)
BEGIN
1 MSHQAIGISN NFQQVQREQL NHQRLLQAQL QTNGPGSVSQ QQQASQQQQQ VQHVQQQQQS
61 QQQQQQVASQ QNQPQLQMNA QILQALSTPQ GQNLVNMLLM QQALNAQQTD TQNPQQIMQH
121 QLAQQQAQQA QQAQQAQQAR QQAEQQAQAQ ARHQAEQQAQ QQAQQQAQAR QQEQQAQLAA
181 IQQQVTPQQF AQILHMQQQL QQQQFQQQQL QQQQLQQQQL QQQQLQQQQL QQQQLQQVLQ
241 ISQAQQQAQQ AQHVQSRQMQ PSQQSQVQAQ LQQQQQLQQQ QAQQLSQQQA QQQQQLQQLQ
301 LQQFLQQQQQ LHQQRAAAQQ AQAQNNASQQ RPSVASTPAL SSTPQLNDLT QTMQAQLQQQ
361 LLLQQQQAQA QQAQQAQQAQ LAQQAQQQQQ GQSQNRTVSQ ALQYIQSMQL QQRADGTPNA
421 ESQEERLAQM LNEQQQRMLQ NQAREAQHRQ LLISSTPAPR GGITMGTPIG IARREEQPVP
481 STVAVTTAPA AVRTPVAVPP MKQNSNPSMN PSSTSTSASA TSSHQILAPS LSKPLEQPSS
541 SKAASSGNES MSDHISRIIS ENEVILQGDP VIRKKRPYHR QIGAQSSVDH DSNSGGSTRT
601 SPGPKDSRML QAASRSQSLF ELSGSKHFMG SLTSGQPLLR PIQAHNDPNY TPECIYCKLT
661 FPNEAGLQAH EVVCGKKKEL EKAQIAQEGN PHSALKRRHT HQDATLAMHS PLAAHTPSNM
721 PGPSEPAIKL KKDDSTELDG TSKPDALQSS SSFPRSLPKE WEQHMLTLQN LAAIIPPFVQ
781 AFLAKVLQTK LTMVSSGTLT HIYENYNISP ICVKQFLHFA SQLTDQQLEE MTVESEKQYL
841 ENAEEYQAKG IIQALPCDNL EVTEMLKQQE TIMKGQVPDL LVSTQAVLHH CSGKRDNKDP
901 SKNFVMIKLL HANGKDITEI PMKAETDLDE CNARFVYQMR EFQKINNMND RLIEVLKTDP
961 AAAATPLFQV AREQSASVKF LIRQTGMVHL TIVASVAKRL GMSSMQQDVP ESNQIPNGII
1021 AFDGVQIKQE PEDPPGDDDD DDDDCIIEVV DEDQKQHIAM LTAAASGQDI GIGGQFQKVT
1081 QNLEPAIVNQ QSIVNHGDSI VNNASIPIAN NAPVQIVQNG GPMQHEVVAM PVQLKLEDLR
1141 LEPQTSGDTD KPYWLVINGD IGGRPSFMTT AGMTSRTHRT RNITSETYVT VPRQQPMFAV
1201 QDGTLSMYAK WNVPVHNDAE TKMNLSFMGM VSLRRRTGQQ KFFKYTTANK DQGHYRMTHS
1261 SFWDISTKIR DRQASMSEEK TPEESVDYDA QFIERLVGGT YTNTDLQGPS NAPVTIPVLV
1321 APEDSTSAEP STSGQSLLMR SPRPQSPPLR DIKMDLSDDD YSATDLATTC KLEPKQESFE
1381 DVKDVKRENS PDARPTVIIS DDAGRIRRER FANKYISRIR PKHDQIIGGH RTDEVYVYVR
1441 GRGRGRYICD RCGIRCKKPS MLKKHIKSHT DVRAFNCTAC NFSFKTKGNL TKHLSSKTHQ
1501 RRISNIQAGN DSDGTTPSTS SMMNMDDGYH RNQPLFDDYD NNSSDEEDYD HLNRMQAEHK
1561 FKFGQEHILF ERTAHTPPTR WCLVEAQNDH YWPSPDRRSC MSAPPVAMQR DFDDRAMTPV
1621 SGANSPYLSQ QVHSPMSTSS QSNIILDIPN NQKSNCSSVS NVSPSNSQNF QSLSTVPTCA
1681 SSSSNVLVPN VNFLQKDETL KCDQCDRTFR KISDLTLHQH THNIEMQQSK NRMYQCSECK
1741 IPIRTKAQLQ KHLERNHGVH MDESVTACID PLASTQSVLG GPSTSNPRSF MCVDCDIGFR
1801 KHGILAKHLR SKTHVMKLES LQRLPVDTLS LITKKDNGAC LNDIDTTDCE KARISLLAIV
1861 EKLRNEADKD EQGSVVPTTS IPAPQPVALT PEMIRALANA QTPVTASMTN TPSTAQFPVG
1921 VVSTPSVFPT PNPSSPLESS SMQFRKKAVL DSATHANDMP RTILRISEIP SSLPVNHQLH
1981 RDLSFLAHTT SRSESSITSP IVSSSTNFSY RKRSESSLSG SSPTHTKKLM VWNPPLAEPS
2041 FYSPKAALHP LSTDKAHASE SLSDRLHNKR PRPIPDNTKC QICADEFSTP IELQVHLHVD
2101 HVRMMDGAEY KCPRKFCGLN YESLDSLRAH VTAHYETDRQ KLLEEKVLLA EADFPIDNSK
2161 IEKLNSPKKE SMNKFTTPFK AISDHHELYA QTQQGAGSST SNQSPKAAN
//