LOCUS CAE48501.1 689 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans GPI ethanolamine phosphate transferase 2 protein. ACCESSION BX284602-3080 PROTEIN_ID CAE48501.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279421) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="II" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="pigg-1" /locus_tag="CELE_F28C6.4" /standard_name="F28C6.4b" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00009204" /db_xref="EnsemblGenomes-Tr:F28C6.4b.1" /db_xref="EnsemblGenomes-Tr:F28C6.4b.2" /db_xref="EnsemblGenomes-Tr:F28C6.4b.3" /db_xref="GOA:Q7JM05" /db_xref="InterPro:IPR002591" /db_xref="InterPro:IPR017850" /db_xref="InterPro:IPR037674" /db_xref="InterPro:IPR039527" /db_xref="UniProtKB/TrEMBL:Q7JM05" /db_xref="WormBase:WBGene00009204" intron_pos 10:0 (1/9) intron_pos 48:1 (2/9) intron_pos 353:1 (3/9) intron_pos 410:0 (4/9) intron_pos 473:0 (5/9) intron_pos 525:2 (6/9) intron_pos 566:2 (7/9) intron_pos 641:0 (8/9) intron_pos 681:0 (9/9) BEGIN 1 MISKKGKFWI SRVLVVCACA LLVYSFVALD ITPTPPTEEF GFKDGNQESS SSPRLVFMVI 61 DAFRLSFLTS SKSPMSFTKS EITKKSAKLF DAYARMPTVT LPRITAYLTG TLPSFGTVLT 121 NLATAEMKTA NWISRIQKIG KKVHFFGDDT WIRLLPRSFE KFEGVTSFFV SDYTDVDNNV 181 TRHLDTELSN TNHSWDALIL HYLGLDHIGH SLGGSSSKIP EKLKEMDDVI GRIHKYLKSS 241 TSVDQESYLI VCGDHGMTAA GSHGGASPDE TRVPVVIWKF GREEGNKNYG NQDDSLKQPP 301 RIEQIDVSST IFDVFNMPIP IESYGISLIN YFSDDEEEYF EKQHNQFRRI VQAKHLAISD 361 ICDENCDYSD KFIKSALKKW FLTVQSELIG SASEVPNKSL GVCVFLLLVA LTLSMGLWNL 421 HLSKSDFFIF LINITYFASS LIEEEHEIWY YLGSTVVAIR ALRNFKIWNK TEVKSIFFLA 481 FLHRIACSYT QSTRRRWIMD SSLLPPSIFS DTLDFQPNNL NTILNEYPII VILTCSLFWM 541 YGYKQSKFHI ILPMVSHFLR LFELTQFNEV LMHFIRLSIL PISYSTGSVL AGCLPLLLAI 601 VPVSQILLLL VIYNMGKLFS KLNLGSVEFV TLCMSSFFYT FINIIFNISL RWTFELSADP 661 CWTSAHAIYI LGSHFVPLWM QCFIMHIIA //