LOCUS CAD8118732.1 888 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Nanos-type domain-containing protein protein. ACCESSION BX284602-3509 PROTEIN_ID CAD8118732.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279421) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="II" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="nos-3" /locus_tag="CELE_Y53C12B.3" /standard_name="Y53C12B.3c" /note="Confirmed by transcript evidence" intron_pos 13:1 (1/7) intron_pos 119:0 (2/7) intron_pos 196:0 (3/7) intron_pos 236:1 (4/7) intron_pos 442:0 (5/7) intron_pos 735:2 (6/7) intron_pos 886:0 (7/7) BEGIN 1 MQLLHFYTQS VPINVHLVMS GQQFQQHSQQ QQQRAPTVYN NNNKKNGGSA ANSNQNNNNP 61 HHTSTTDSVP NSTANVSSAI SFEYSEPPGN TTRTTPDSGL GTDDQKGTPQ QTRAPPGFHR 121 AAYHRNSGQQ QFSQMRPQPP HTGPPNGMTY YGGTVGAPGY QQQQPPPQEG YDQQQQFGGG 181 SDGGQYQRGP PGGYRQYQQM ESGGPPSGYA DDNNGGNNNF VIHGPNDNFD GRPQYNPQAG 241 PPPQNQQQMM NSGNYEIDQY RGQGPPPGNT YQQQGHSGQA QYYAGPVIQQ RPPPPHNAQS 301 YGQYRGPQGP QGQIIQMMPH NPQNQQQQQQ HPMLYPMVYV PVPAPRVFRQ EPAGGASSLE 361 KDGGNARKSK RNSQNEDDGQ QHQHQNEQQP QQGYHQQDFV SNPLWNQMPV GYAPPGNFTQ 421 PQQQHQQMDQ QQAVQMQHQM QMFQQMQPYG MPQGGPPPPH AAASMMNHPH QQNHPHMNAQ 481 MTQQQHPGQY LPQQYMQMVP PPHHQMQQMQ QQGRRPGGVE PLMGGPPYQM SGQINQMGGP 541 IRGGFGMQQQ QPMGYFNSGR GGNAGSGRGR GGSRGHGYQH SRQNSNQSYN SSQSYPQNRG 601 NFDSSSQYQS DSQQVDESVT QLTNRIEHLQ PVSSRAGSPS KQILQLVESK DDQTSTENSE 661 SPSRSSTPKH RKKTPKKDFK VDQEASIEAT KTEISEENPK TDDIQSKDDV TSKSELHCYR 721 CEHYQLPAEE VSSHNIRKDN GDLWCEHMKK IKCGHCEATG EQGHHPLICP KKKEEERVAK 781 SRESSQKPID PQEISDDQDD TVPDVPDQIV EQDNQSHKSR HNSENRSGGR GYGQNYSHSY 841 GGNSTGSYRG RSSGGSGGSG RGGGRGGYSR GHGGGSGGGQ RGNYQFPE //