LOCUS CAD76902.1 1276 aa PRT BCT 27-FEB-2015
DEFINITION Rhodopirellula baltica SH 1 conserved hypothetical protein protein.
ACCESSION BX294152-26
PROTEIN_ID CAD76902.1
SOURCE Rhodopirellula baltica SH 1
ORGANISM Rhodopirellula baltica SH 1
Bacteria; Planctomycetes; Planctomycetia; Pirellulales;
Pirellulaceae; Rhodopirellula.
REFERENCE 1 (bases 1 to 304250)
AUTHORS Gloeckner F.O., Kube M., Bauer M., Teeling H., Lombardot T.,
Ludwig W., Gade D., Beck A., Borzym K., Heitmann K., Rabus R.,
Schlesner H., Amann R., Reinhardt R.
TITLE Complete genome sequence of the marine planctomycete Pirellula sp.
strain 1
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 100(14), 8298-8303(2003).
PUBMED 12835416
REFERENCE 2 (bases 1 to 304250)
AUTHORS Kube M., Borzym K., Heitmann K., Klages S., Marquardt I.,
Lehrack S., Beck A., Pawlik R., Reinhardt R., Gloeckner F.O.,
Bauer M., Teeling H., Lombardot T., Ludwig W., Gade D., Rabus R.,
Schlesner H., Amann R.
JOURNAL Submitted (21-JAN-2003) to the INSDC. Max Planck Institute for
Molecular Genetics, proScience Ihnestrasse 73, D-14195 Berlin,
Germany Max Planck Institute for Marine Microbiology Celsiusstrasse
1, D-28359 Bremen, Germany.
COMMENT This project was carried out by
*Max Planck Institute for Molecular Genetics, Berlin, Germany;
*Max Planck Institute for Marine Microbiology, Bremen, Germany;
in the fremework of the REGX-project, http://www.regx.de
-------------- Genome Center
Center: Max Planck Institute for Molecular Genetics
Center code: MPIMG
-------------- Summary Statistics
Sequencing vector: pUC19; 100% of reads
Chemistry: Dye-terminator Big Dye; 100% of reads
Assembly program: Phrap; version 0.990329
Consensus quality: 7142841 bases at least Q40
Consensus quality: 7145138 bases at least Q30
Consensus quality: 7145484 bases at least Q20
Quality coverage: 8.03
--------------
This sequence was finished as follows unless otherwise noted:
all regions were double stranded, sequenced with an alternate
chemistry, or coveredby high quality data (i.e., phred quality
>= 30); an attempt was made to resolve all sequencing problems,
such as compressions and repeats; allregions were covered by at
least one plasmid Sequence; assembly was additionally confirmed
by long range pcr and cosmid end sequences.
--------------
See http://www.micro-genomes.mpg.de/pirellula/ for more information
including minimal tiling path from a set of 220 cosmids out of
908.
See the misc_feature tag below for the boundaries of the MTP
cosmids.
-------------- Annotation
Center: Max Planck Institute for Marine Microbiology
Celsiusstrasse 1, D-28359 Bremen, Germany.
Center Code: MPIMM
Email: fog@mpi-bremen.de
Phone: +49 (0)421 2028 938 Fax: +49 (0)421 2028 580
--------------
Three different programs (Glimmer, Critica and Orpheus) were used
for ORF-prediction. A nonredundant list of ORFs was generated by
suitable parsing of the results.
Automated annotation was done with the software package Pedant Pro
(http://www.biomax.de). All ORF predictions and annotations were
manually corrected by considering all results of the different
tools applied. See http://www.regx.de for more information and
access to supplementary information.
--------------
FEATURES Qualifiers
source /organism="Rhodopirellula baltica SH 1"
/strain="1"
/mol_type="genomic DNA"
/db_xref="taxon:243090"
protein /transl_table=11
/gene="yahN"
/locus_tag="RB10659"
/note="best DB hits: BLAST: pir:H69818; conserved
hypothetical protein yhaN - Bacillus subtilis; E=2e-07
ddbj:BAB05865.1; (AP001514) BH2146~unknown conserved
protein; E=0.002 pir:S56387; hypothetical protein f1107 -
Escherichia coli -----; E=0.004 COG: BH2146; COG1511
Predicted membrane protein; E=2e-04 yjeP; COG3264
Small-conductance mechanosensitive channel; E=4e-04 PFAM:
PF00005; ABC transporter; E=0.1"
/db_xref="InterPro:IPR027417"
/db_xref="InterPro:IPR038734"
/db_xref="UniProtKB/TrEMBL:Q7UKG2"
BEGIN
1 MDRSSNDRTA RPTARRQTMI IERLDLIAFG HITNRSLDLS AGPNRFHLIV GPNESGKSTS
61 LRAISSWLFG MATRADDAFL HPAAKLRVGG RLTSFSSDGT GTQKVLECIR RRGRKNTLRG
121 ADDQAEIADS ELAQMLGGID EATFRSRFGL SHEELLLGGE QILRGEGELG EILFSAGAGI
181 GRLREIYEQL DSEASERFKR TGKTPTINNS LQELDEMRRR LREAQVPPAE FADLQKQLAE
241 KETQIQSWRE ESQSLAQQIA QLKSAEQALP LIPRWKTATQ ELSSVQDAPM LSDDFPDRRR
301 EWEQEQKSTI RLLQTLQQNH AALTEQLKQL GHDESIGLFE SEIVTLYREL PGREKAEGEK
361 ETLRQSLAVL EREMRSQLHD LAFGEVPQEF DQQVTDPDAL MQQVDSLQIS ESQRAKIQRL
421 ASEYEKLVQQ RDDASDQLDQ AKRELTLAEE ALAESKTPTQ FQLLDRTLDE MGAPERWIEA
481 ARREQSQVEK LARECQTIHR RLKLDPSSDD DAIQSAVELS LPTQSQLTDL TQDLDRAGKE
541 VMLCQQRGQE LQQTLANAEE KIASLNADAG DLPTPEDLRD ARQHRDKIID AMKQDAGTTS
601 ADQWAAQLAA AELAIHRADS IADIFQSQHQ SIYRRQAAQN NLDQLRRQLS EHDSVLATAQ
661 ASLAQAQENW QSIWQAAGVP ASDPDTMRSW ISDHQKLIEH FAELQTAIAE RDQSHAQLRQ
721 AISRLQQALE MVGSDNSSKD SLEQTSTNLS RLHDVALTQR AEHAQQLKLR EQRENKRNEC
781 RTEIPGLESK LQRRQSALDS WDQQWDELTA SLKLTTKPAP QDALSMMDSI TQLIGQKKQR
841 DDISLRIASI SKETDAFVRR AIRLRDSLDS PDVVANSSTI PSGDTAGLTE LAETINSAHE
901 RLQREQRARS ARDEVQQQLS QRERELADAN EQLERLAITQ QQLFDEAHCS APEELGDVEE
961 RSRRRILAQS KVEDLQSQLD HWASGQDRES FIESLQGQQP AMIAEELKQL TDKKSELDER
1021 LSASQKELWS LNQRLDAING SSEASKLSQQ MQFSLGKLQR ESEEYIRLRL AAAILQRAME
1081 HYRNQNQEPV LREAESFFAT LTCDEYQSLR VDYGEGDKPS LFGVRDGIDV PANRMSTGTA
1141 DALYLALRLA SLKHQLAHAN AIPLIIDDCL IQLDDRRAAA ALKVFSELST TTQVILFTHH
1201 DHLVDLASET LPDDGYHVHR LGEASSTASG SSARPATSDP KPKKRPARKK ASPKASPKKP
1261 DESLSPPDTL FDVFSP
//