LOCUS CAD44161.1 770 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans PH domain-containing protein protein. ACCESSION BX284606-3304 PROTEIN_ID CAD44161.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="obr-3" /locus_tag="CELE_ZK1086.1" /standard_name="ZK1086.1b" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00014215" /db_xref="EnsemblGenomes-Tr:ZK1086.1b" /db_xref="GOA:Q8MPR9" /db_xref="InterPro:IPR000648" /db_xref="InterPro:IPR001849" /db_xref="InterPro:IPR011993" /db_xref="InterPro:IPR037239" /db_xref="UniProtKB/TrEMBL:Q8MPR9" /db_xref="WormBase:WBGene00014215" intron_pos 51:0 (1/10) intron_pos 115:0 (2/10) intron_pos 145:0 (3/10) intron_pos 183:0 (4/10) intron_pos 208:0 (5/10) intron_pos 290:0 (6/10) intron_pos 352:2 (7/10) intron_pos 548:0 (8/10) intron_pos 638:2 (9/10) intron_pos 718:0 (10/10) BEGIN 1 MLERRKERKL TITSPNEDMR IVEPPAHKQR RASLSVAYHR LLSFSSSPIK KQKKEYRDEK 61 KRVNDELLSA LRDPTVVVMA DTLKIRGALK RWNRYYCVLK PGLLILYKHK KADRGDWVGT 121 VLLNHCELIE RPSKKDGFCF KLFHPMDMSI WGNRGPLGQS FGSFTLNPLN TSFLICRAPS 181 DQAGRCWMDA LELSFKCTGL LKKTMNELDD KNGDSSMNDG QRDESRMSRD SDGDDTRELA 241 VSETDAEKHF QEIDDVQDED HEDGKMSETS DTIREAFTES AWIPSPKEVF GPDGSLTEEV 301 GEENKSLIWT LLKQIRPGMD LSKVVLPTFI LEPRSFLEKL ADYYYHADLI SEAVAEPDPF 361 QRIVKVTKFF LSGFYKKPKG LKKPYNPILG ETFRCKWEHP DGSTTFYMAE QVSHHPPVSS 421 LFITNRKAGF NISGTILAKS KYYGNSLSAI LAGKLRLTLL NLGETYIVNL PYANCKGIMI 481 GTMTMELGGE VNIECEKTGY RTTLDFKLKP MLGGAYNQIE GSIKYGSDRL ASIEGAWDGV 541 IRIKGPDGKK ELWNPTPEVI KTRLPRYEIN MDEQGEWESA KLWRHVTEAI SNEDQYKATE 601 EKTALENDQR ARAKSGIPHE TKFFKKQHGD DYVYIHADYR PWDNNNDIQQ IENNYVVKTI 661 SRHSKRKTGN SEQLGSDNTS EASESDEEVI EPKIKKKEIV PAKSKPITPE VADERIKEME 721 RKFELAIRRM EAANERQSSR TLNAIQSTLL FVFVVTSVVQ SIFMFFMLRK //