LOCUS CAD44152.2 725 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Transcription factor sma-9 protein.
ACCESSION BX284606-2540
PROTEIN_ID CAD44152.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="sma-9"
/locus_tag="CELE_T05A10.1"
/standard_name="T05A10.1b"
/note="Partially confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00004862"
/db_xref="EnsemblGenomes-Tr:T05A10.1b"
/db_xref="GOA:Q8MPY1"
/db_xref="UniProtKB/TrEMBL:Q8MPY1"
intron_pos 37:0 (1/7)
intron_pos 212:0 (2/7)
intron_pos 264:0 (3/7)
intron_pos 443:1 (4/7)
intron_pos 486:0 (5/7)
intron_pos 511:1 (6/7)
intron_pos 648:0 (7/7)
BEGIN
1 MAFAPGSGGG GAPPGQQPAQ MMMPQNISAE TYHRLNQVQR EQLNHQRLLQ AQLQTNGPGS
61 VSQQQQASQQ QQQVQHVQQQ QQSQQQQQQV ASQQNQPQLQ MNAQILQALS TPQGQNLVNM
121 LLMQQALNAQ QTDTQNPQQI MQHQLAQQQA QQAQQAQQAQ QARQQAEQQA QAQARHQAEQ
181 QAQQQAQQQA QARQQEQQAQ LAAIQQQVTP QQFAQILHMQ QQLQQQQFQQ QQLQQQQLQQ
241 QQLQQQQLQQ QQLQQQQLQQ VLQISQAQQQ AQQAQHVQSR QMQPSQQSQV QAQLQQQQQL
301 QQQQAQQLSQ QQAQQQQQLQ QLQLQQFLQQ QQQLHQQRAA AQQAQAQNNA SQQRPSVAST
361 PALSSTPQLN DLTQTMQAQL QQQLLLQQQQ AQAQQAQQAQ QAQLAQQAQQ QQQGQSQNRT
421 VSQALQYIQS MQLQQRADGT PNAPSLSKPL EQPSSSKAAS SGNESMSDHI SRIISENEVI
481 LQGDPVIRKK RPYHRQIGAQ SSVDHDSNSG GSTRTSPGPK DSRMLQAASR SQSLFELSGS
541 KHFMGSLTSG QPLLRPIQAH NDPNYTPECI YCKLTFPNEA GLQAHEVVCG KKKELEKAQI
601 AQEGNPHSAL KRRHTHQDAT LAMHSPLAAH TPSNMPGPSE PAIKLKKDDS TELDGTSKPD
661 ALQSSSSFPR SLPKEWEQHM LTLQNLAAII PPFVSERLYR IHTKDKTPEI KLVSIFGSFY
721 FLILK
//