LOCUS CAD44122.1 949 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Myelin regulatory factor homolog
2, N-terminal protein.
ACCESSION BX284606-2402
PROTEIN_ID CAD44122.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="myrf-2"
/locus_tag="CELE_F21A10.2"
/standard_name="F21A10.2c"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00008999"
/db_xref="GOA:D9PTN5"
/db_xref="InterPro:IPR008967"
/db_xref="InterPro:IPR024061"
/db_xref="InterPro:IPR025719"
/db_xref="InterPro:IPR026932"
/db_xref="InterPro:IPR030392"
/db_xref="UniProtKB/Swiss-Prot:D9PTN5"
/db_xref="WormBase:WBGene00008999"
intron_pos 15:1 (1/10)
intron_pos 39:2 (2/10)
intron_pos 92:0 (3/10)
intron_pos 189:0 (4/10)
intron_pos 314:0 (5/10)
intron_pos 352:0 (6/10)
intron_pos 444:0 (7/10)
intron_pos 730:1 (8/10)
intron_pos 770:0 (9/10)
intron_pos 849:2 (10/10)
BEGIN
1 MLPRNGYPPG YEEFEEGLND PLANVEQFNI IQFLQNDVDF NLPIEAFEQG NMDQNIRIDP
61 ILQRQQMANQ PMLMPQHMLQ QLHQQQIYEQ QLASMPMTPA ITDLTRHGSS SSPSTTNSDP
121 PYSPEGLNNF GLGTQRPNHG VIPNDISNVP QHINRQFNPR MGPNTSPNPP SFPQFLNSNH
181 PTPGSYVQSI SPDSNGQGFA QSNLYNALNV SSDESINGSD DIPNRKRPRM DQNMDPSFIM
241 HAPVSGKLGA EVTEEGGQPN IRFFKYQEEQ WCPMYDANGE ELGRLQVHVL ADKGFNYSTN
301 DNCFVNQKKN HFQVTVKIEA IDPSPPQCFK INGVCKPIEN FQLSFVGAKS ESQNSEIPIR
361 QSTTERKPIL HTPVLFKIVE RRMTIVTVPR LHFSETTLNN QRKNLRPNPD QKYFNLVVRL
421 YATATDGTTV LMQAFASERV IVRATNPGSF EPPEMVDASW NKNGGILSTN GPVVIGKSEP
481 RAQLTVDGDI YSSGRVMYPS DIRLKDNITE KGAKDALENL QKLRIVDYFY KPEVASKWGL
541 TEDQRKRTGV IAQELAAVLP DAVKDLGDYL TVNESRVFYE TVLATQELCR LTGDLDQKID
601 DKVAEISQRL TQYAQKKKML NSMASGLNSE GRSLNASRTS LDSSASALTL TNTKKNRRSS
661 RKDKKDAPKS KMTHGTVIGL VGVMAFCLLA MSALYILDWH NRNFGYHHFT PSATTSGPKE
721 GPGNVVIPLD HYVPLRQPDA PPLVPFCPME TCRGYCCMEY DKDHAELEIT EYDPNTATDN
781 DFGFKADTRS DFTLKGFGNN VKISLPELGM QIDERYCIEK SCVKKRKVYS LFIPMTRYLP
841 NVPLEVQIDV PSSKVVNNCG YIQEFDNRKC DETGSSSTET DAPRSIQLFD NTFQVSAGQW
901 TQSAYRFRVG YSTELCSIDD THFGGFYEEY NLIFYRACNR TNSTAINVV
//