LOCUS       CAD1857025.1             678 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Nuclear hormone receptor HR3 protein.
ACCESSION   BX284606-2524
PROTEIN_ID  CAD1857025.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="daf-12"
                     /locus_tag="CELE_F11A1.3"
                     /standard_name="F11A1.3e"
                     /note="Confirmed by transcript evidence"
     intron_pos      23:1 (1/15)
     intron_pos      51:0 (2/15)
     intron_pos      92:0 (3/15)
     intron_pos      181:0 (4/15)
     intron_pos      197:0 (5/15)
     intron_pos      221:0 (6/15)
     intron_pos      253:0 (7/15)
     intron_pos      278:0 (8/15)
     intron_pos      310:2 (9/15)
     intron_pos      346:1 (10/15)
     intron_pos      412:0 (11/15)
     intron_pos      472:0 (12/15)
     intron_pos      569:2 (13/15)
     intron_pos      623:2 (14/15)
     intron_pos      649:0 (15/15)
BEGIN
        1 MSTPDDPVIH SPPSIGAAPG MNGYHGSGVK LEESSGACGS PDDGLLDSSE ESRRRQKTCR
       61 VCGDHATGYN FNVITCESCK AFFRRNALRP KEFKCPYSED CEINSVSRRF CQKCRLRKCF
      121 TVGMKKEWIL NEEQLRRRKN SRLNNTGTCN KRSQPGNQQS PQGPNQQPHL SPHHPGVAIY
      181 PPQPQRPLTI NPMDNQMMHH MQANRPNAMP QLISPPGAQP YPLTSPVGSS ASDSPPNRSL
      241 TMMHNGEKSP DGYDPNIMAH RAPPPSFNNR PKMDSGQVVL STEEYKQLLS RIPGAQVPGL
      301 MNEEEPINKR AAYNCNGHPM PAETTPPYSA PMSDMSLSRH NSTSSGNSAQ NHFDIASFGM
      361 GIVTATGGGD AAEEMYKRMN MFYENCIQSA LDSPENQEPK PQEAMIPKEE YMTPTHGFQY
      421 QSDPYQVPPA ERNINYQLNA AELKALDAVR EAFYGMDDPM EQGRQMQSFL KANKTPADIM
      481 NIMDVTMRRF VKVAKGVPAF REVSQEGKFS LLKGGMIEML TVRGVTRYDA STNSFKTPTI
      541 KGQNVSVNVD DMFAKLNANA QAQKAKCLEF FGFFDEEIKK NELAVYLVML AVLFSVRSDP
      601 PMNENDVRIV TERHNHFMSL LNRYLESLFG EQARRIFERI PKALGLLNEI ARNAGMLFMG
      661 TVRSGEAEEL PGEFFKIK
//