LOCUS CAC70094.2 988 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Myoblast growth factor receptor
egl-15 protein.
ACCESSION BX284606-2622
PROTEIN_ID CAC70094.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="egl-15"
/locus_tag="CELE_F58A3.2"
/standard_name="F58A3.2b"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00001184"
/db_xref="WormBase:WBGene00001184"
intron_pos 30:1 (1/17)
intron_pos 51:0 (2/17)
intron_pos 105:0 (3/17)
intron_pos 128:1 (4/17)
intron_pos 193:1 (5/17)
intron_pos 272:0 (6/17)
intron_pos 352:0 (7/17)
intron_pos 406:0 (8/17)
intron_pos 442:0 (9/17)
intron_pos 587:2 (10/17)
intron_pos 614:0 (11/17)
intron_pos 712:0 (12/17)
intron_pos 777:2 (13/17)
intron_pos 805:2 (14/17)
intron_pos 840:2 (15/17)
intron_pos 895:0 (16/17)
intron_pos 933:0 (17/17)
BEGIN
1 MSYFLASCLG VGLLSTVSCS LQGLTSHYRE NIPRFKHVAN ERYEVFLGDE IKFDCQTAAS
61 KISAFVEWYR NDKLLKNDQI DKDKIRKDNN RMMLHLKNID VSDQGLWSCR VHNAYGQISR
121 NFTVEVIDPL KLFDWLTEHR VFDISHLLPK LLPPAEMRRV KSQLGGWEKM NNEQKIVRAR
181 HILRLRQINH ALGTEFINAD EKENKEDEEE DYSVSQPVAP DAGLTELNIT AEEPPYFKSN
241 DNIVLFNETH ALPAGRTLKL NCRAKGYPEP QIIWYKNGKM LKKSSARSGG YEFKFNRWSL
301 EVEDAVVADS GEFHCEALNK VGSAKKYFHV IIVNRMRRPP IIVPNILANQ SVNINDTATF
361 HCKVVSDLLP HIIWVRINKI NGSYSYYNNS AEEYMFNYTE MDTFDKAHVH HVGDESTLTI
421 FNVSLDDQGI YACLSGNSLG MSMANATLTV NEFMAIHLLT GDEPKIDRWT TSDYIFTTIL
481 LFLLLAATLF GILFMVCKQT LHKKGFMDDT VGLVARKKRV VVSKRPMNED NENSDDEPSP
541 YQIQIIETPI TKKEAARKQR KRMNSENTVL SEYEVDSDPV WEVERSKLSL VHMLGEGAFG
601 EVWKATYKET ENNEIAVAVK KLKMSAHEKE LIDLVSEMET FKVIGEHENV LRLIGCCTGA
661 GPLYVVVELC KHGNLRDFLR AHRPKEEKAK KSSQELTDYL EPRKASDKDD IELIPNLTQR
721 HLVQFAWQVA QGMNFLASKK IIHRDLAARN VLVGDGHVLK ISDFGLSRDV HCNDYYRKRG
781 NGRLPIKWMA LEALDSNVYT VESDVWSYGV LLWEIMTLGG TPYPTIAMPE LYANLKEGYR
841 MEPPHLCPQE VYHLMCSCWR EKLEERPSFK TIVDYLDWML TMTNETIEGS QEFNDQFFSE
901 RSTASGPVSP MESFQKKRKH RPLSAPVNLP SEPQHTICDD YESNFSVEPP NDPNHLYCND
961 NMLKNHIITP ETSQRIPSNN NSMSKPEF
//