LOCUS CAC42319.1 705 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Tyrosine decarboxylase protein. ACCESSION BX284602-2960 PROTEIN_ID CAC42319.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279421) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="II" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="tdc-1" /locus_tag="CELE_K01C8.3" /standard_name="K01C8.3b" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00006562" /db_xref="EnsemblGenomes-Tr:K01C8.3b" /db_xref="GOA:Q95ZS2" /db_xref="InterPro:IPR002129" /db_xref="InterPro:IPR010977" /db_xref="InterPro:IPR015421" /db_xref="InterPro:IPR015422" /db_xref="InterPro:IPR015424" /db_xref="InterPro:IPR021115" /db_xref="UniProtKB/Swiss-Prot:Q95ZS2" /db_xref="WormBase:WBGene00006562" intron_pos 31:1 (1/9) intron_pos 74:1 (2/9) intron_pos 182:0 (3/9) intron_pos 392:2 (4/9) intron_pos 416:1 (5/9) intron_pos 490:0 (6/9) intron_pos 551:1 (7/9) intron_pos 622:2 (8/9) intron_pos 662:2 (9/9) BEGIN 1 MVYGLGEALK NLNSYCQERT TRIRNSLSPS RPSMSEATAT GSSSSSRAST TIPSTPNMDV 61 TPTVEDPRQN DNNASGMTRD EFRQYGKETV DYIVDYLENI QKRRVVPAIE PGYLKDLIPS 121 EAPNTPESFE SVMEDFEKLI MPGITHWQHP RFHAYFPAGN SFPSIIADML SDAIGCVGFS 181 WAACPAMTEL ELIMLDWFGK MIGLPAEFLP LTENGKGGGV IQSSASECNF VTLLAARFEV 241 MKELRQRFPF VEEGLLLSKL IAYCSKEAHS SVEKACMIGM VKLRILETDS KFRLRGDTLR 301 NAIQEDRNLG LIPFFVSTTL GTTSCCSFDV LSEIGPICKE NELWLHVDAA YSGSAFICPE 361 FRPLMNGIEY AMSFNTNPNK WLLINFDCST MWVRDRFKLT QALVVDPLYL QHSWMDKSID 421 YRHWGIPLSR RFRSLKLWFV IRMYGIDGLQ KYIREHVRLA KKMETLLRAD AKFEIVNEVI 481 MGLVCFRMKG DDELNQTLLT RLNASGRIHM VPASLGDRFV IRFCVCAENA TDKDIEVAYE 541 IIAQATQHVL HDSVKAVIAE EDEEAVALEE MVADLNITET PEKCLTRQNS ANAAESGQKL 601 ERQLSKEEIL AQKQHESLAK KRSFLVRMVS DPKCYNPKIV RHLNMANHRK MSQDLYRDRT 661 LMQTISHSQR PNRLSQSPGS AGSAFFDDDD DRIVADVQTG LQTPI //