LOCUS CAB60351.1 2145 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans U5 small nuclear ribonucleoprotein
200 kDa helicase protein.
ACCESSION BX284602-4440
PROTEIN_ID CAB60351.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="snrp-200"
/locus_tag="CELE_Y46G5A.4"
/standard_name="Y46G5A.4"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00012896"
/db_xref="EnsemblGenomes-Tr:Y46G5A.4"
/db_xref="WormBase:WBGene00012896"
intron_pos 147:1 (1/11)
intron_pos 421:2 (2/11)
intron_pos 801:0 (3/11)
intron_pos 937:0 (4/11)
intron_pos 1329:0 (5/11)
intron_pos 1459:0 (6/11)
intron_pos 1562:1 (7/11)
intron_pos 1699:1 (8/11)
intron_pos 1753:0 (9/11)
intron_pos 1829:1 (10/11)
intron_pos 2083:2 (11/11)
BEGIN
1 MADELARIQQ YEYRQNSNLV LSVDYNLTDR RGREEPTGEV LPITDKEMRK MKMGDRAIKG
61 KAPVQDQKKK RKKKDDEKAQ QFGRNVLVDN NELMGAYKPR TQETKQTYEV ILSFILDALG
121 DVPREVLCGA ADEVLLTLKN DKFRDKEKKK EVEALLGPLT DDRIAVLINL SKKISDFSIE
181 EENKPEGDGD IYENEGVNVQ FDSDEEEDDG GMVNEIKGDS EEESEEEEGV DTDYTATLKG
241 DGHLTEDEQK ARGILHPRDI DAHWIQRSLA KYFKDPLIAQ QKQTEVIGIL KNAADDRDAE
301 NQLVLLLGFD QFEFIKCLRQ NRLMILYCTL LRQANEKERL QIEDDMRSRP ELHPILALLQ
361 ETDEGSVVQV EKSKRDAEKS KKAATAANEA ISAGQWQAGR KMLDLNDLTF SQGSHLMSNK
421 RCELPDGSYR RQKKSYEEIH VPALKPRPFA EGEKLVSVSE LPKWAQPAFD GYKSLNRIQS
481 RLCDSALRSK EHLLLCAPTG AGKTNVALLT MLQEIGNHLA EDGSVKLDEF KIVYIAPMKS
541 LVQEMVGSFS KRLAPFGITV GEMTGDAQMS KEQFMATQVI VCTPEKYDVV TRKGGERAYN
601 QMVRLLIIDE IHLLHDDRGP VLESIVVRTI RQMEQNHDEC RLVGLSATLP NYQDVATFLR
661 VKPEHLHFFD NSYRPVPLEQ QYIGVTEKKA LKRFQAMNEV VYDKIMEHAG KSQVLVFVHS
721 RKETAKTAKA IRDACLEKDT LSAFMREGSA STEILRTEAE QAKNLDLKDL LPYGFAIHHA
781 GMNRVDRTLV EDLFADRHIQ VLFSTATLAW GVNLPAHTVI IKGTQIYNPE KGRWTELGAL
841 DIMQMLGRAG RPQYDDRGEG ILITNHSELQ YYLSLMNQQL PVESQMVSRL TDMLNAEVVL
901 GTVSSVSEAT NWLGYTFLFV RMLKNPTLYG ITHEQARADP LLEQRRADLI HTACVLLDKA
961 GLIKYDKRSG IIQATELGRI ASHFYCTYES MQTYNKLLVE TCSDIDLFRI FSMSSEFKLL
1021 SVRDEEKLEL QKMAEHAPIP IKENLDEASA KTNVLLQAYI SQLKLEGFAL QADMVFVAQS
1081 AGRLFRALFE IVLWRGWAGL AQKVLTLCKM VTQRQWGSLN PLHQFKKIPS EVVRSIDKKN
1141 YSFDRLYDLD QHQLGDLIKM PKMGKPLFKF IRQFPKLEMT TLIQPITRTT MRIELTITPD
1201 FKWDEKVHGS AEGFWIFIED TDGEKILHHE FFLLKQKFCS DEHVVKMIVP MFDPMPPLYY
1261 VRIVSDRWIG AETVLPISFR HLILPEKYPP PTELLDLQPL PISAVTNKEF QTVFAESGFK
1321 VFNPIQTQVF RTVFESNENV IVCAPNGSGK TAIAELAVLR HFENTPEAKA VYITPMEDMA
1381 TKVYADWKRR LEPAIGHTIV LLTGEQTMDL KLAQRGQLII STPERWDNIS RRWKQRKSVQ
1441 NVKLFIADDL HMIGASNGAV FEVVCSRTRY ISSQLESAVR VVALSSSLTN ARDLGMWLGC
1501 SASATFNFMP STRPVPLDLE IKSFNLSHNA SRFAAMERPV YQAICRHAGK LEPKPALVFV
1561 PVRRQTRPVA VALLTMALAD GAPKRFLRLA EHDDTFQALL ADIEDESLRE SVSCGVGFLH
1621 EGTAPKDVHI VQQLFESNAI QVCVVPRGMC YQIEMSAYLV VVMDTQFYNG KYHVYEDYPI
1681 ADMLHMVGLA NRPILDSDAK CVVMCQTSKR AYYKKFLCDP LPVESHLDHC LHDHFNAEIV
1741 TKTIENKQDA IDYLTWTLLY RRMTQNPNYY NLQGTTHRHL SDALSELVEL TLKDLENSKC
1801 IAVKDEMDTV SLNLGMIASY YYISYQTIEL FSMSLKEKTK TRALIEIISA SSEFGNVPMR
1861 HKEDVILRQL AERLPGQLKN QKFTDPHVKV NLLIHAHLSR VKLTAELNKD TELIVLRACR
1921 LVQACVDVLS SNGWLSPAIH AMELSQMLTQ AMYSNEPYLK QLPHCSAALL ERAKAKEVTS
1981 VFELLELEND DRSDILQMEG AELADVARFC NHYPSIEVAT ELENDVVTSN DNLMLAVSLE
2041 RDNDIDGLAP PVVAPLFPQK RKEEGWWLVI GDSESNALLT IKRLVINEKS SVQLDFAAPR
2101 PGHHKFKLFF ISDSYLGADQ EFDVAFKVEE PGRSNRKRKH EKEED
//