LOCUS CAB60334.3 1343 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Homeobox domain-containing protein protein.
ACCESSION BX284602-4406
PROTEIN_ID CAB60334.3
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="ceh-100"
/locus_tag="CELE_Y38E10A.6"
/standard_name="Y38E10A.6a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00012584"
/db_xref="EnsemblGenomes-Tr:Y38E10A.6a"
/db_xref="GOA:Q9U2M6"
/db_xref="InterPro:IPR001356"
/db_xref="InterPro:IPR009057"
/db_xref="UniProtKB/TrEMBL:Q9U2M6"
/db_xref="WormBase:WBGene00012584"
intron_pos 85:0 (1/17)
intron_pos 147:0 (2/17)
intron_pos 205:0 (3/17)
intron_pos 285:0 (4/17)
intron_pos 325:0 (5/17)
intron_pos 382:0 (6/17)
intron_pos 440:0 (7/17)
intron_pos 485:0 (8/17)
intron_pos 525:0 (9/17)
intron_pos 579:0 (10/17)
intron_pos 637:0 (11/17)
intron_pos 745:0 (12/17)
intron_pos 803:0 (13/17)
intron_pos 1057:0 (14/17)
intron_pos 1115:0 (15/17)
intron_pos 1292:0 (16/17)
intron_pos 1317:0 (17/17)
BEGIN
1 MFHNRPSTSG PPPQKRKYVR KQLPQPPQFV SSAVTSGPMH HRMHEQHQQL DDEREFLRDH
61 LARNDPFFPR ELEPQQDVVE QQLQDADWTP SPAKKKGARA GIPIGSHPPW PEYITRVLDD
121 VFINCQFINE ETKKELAKEL DLTTTQVKDW FNRRRRHALE AHQKNSVELP EQMRILNEAY
181 ERNPILDTDT KNRLLDVTKL SANLISNYFI KRYKKEQKEA GIPYEAGHYV RRRRVYEEEE
241 EFENNGIGTP HYDEDGNYVG DYVEVVEEIP DWDQEVYNQA ERKRRAELKE EEDKLLDEQF
301 AKNPFTTGEE LTEFAKKLNR PRPFVLKWFW KKRKRLGIER EVPPQQDGKN ELLENIFEKH
361 QFVNQKIKEK IAERTNMKPL AVQMWFKKRR DAAVYAHEHH GYELPCQMKL LDEAYNKCRI
421 ISDKDRRKLM KATKLTSNYI SSYFMHRDKI ASRQETENDT TIQMDDLNEE DDGEGADGGS
481 PKKKRVLTKL EEERILEEFF QKNAWCEGQD LIDMAKKINR PTVFLSKWFS KARRKSGVKR
541 KDPEPYGIHL EPYFQKHQFV DGAKYNELAE IAGVNPTTVK SWYMRRRLRA QKAHDEHGEE
601 LPCQMKELQE AFAGHRKLSK GHFQYIGDKI GLTANFVSNY FTIRKRMSKG AKRGERLSDS
661 DDDDDEPEDD GEEKNEEKNE EEARKAAEKA EKAQKMTEML EAMTEEERQK YQDNVLYTIF
721 QKTQFVDDRR YQEISCETGM PAEEIRDWFQ KKRVSSVEEY RKDGKELPKQ MKLLHESYER
781 CPMLGDDVRY NLALKTFLPP KSITNFFINR NRKTAIKMRA ESSSVDGEAE PPNNDGFYEF
841 NLEEPAPILR KSLRKPVPRI LGDFGSYPEK NGSETAEKAQ ILKKNGSETA EIAEKAQISE
901 KKPVNRLVID EVLKSPQKSE KIPEKAQEIE EIEESPKKSE KAPEKPQEIQ EIPKKSEKAP
961 EKPQEIEKSP KKSEKRQEIQ EIPQKSEKTS EKRPEIEELP TFFKSSAPAQ TPEIISDEDI
1021 FAQYESLLNA VFSEFQFVDD RTNYQLSKQI RIGMPQIREW FRKKRESSVE EHRTNGTELP
1081 KQMKLLHEAY QRCPLLDEDA RRDLVEKTQL LPKWVTNFFI NRSRKAQKAA ENAAEPSTSD
1141 ATTTSDDGFF DFNIENPVAL TQTRKSARRP APKNYDDFFG EDADLDELLR ATTTNPPAAP
1201 VATAFTKIGS HIIISPSQKH KSTQTTDFGP KEAPKEAPKA VVETLEPDTS DEEFVADELF
1261 EFNLDDFEPR PDRKRPAGPP IYRPPPKQPK LSISKTRILE EAYANLLKDG KLTAHEIATF
1321 FANRNNNTEI DQKPRIHMVP KKE
//