LOCUS CAB60297.2 1209 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Tyrosine-protein kinase abl-1 protein. ACCESSION BX284606-2514 PROTEIN_ID CAB60297.2 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="abl-1" /locus_tag="CELE_M79.1" /standard_name="M79.1c" /note="Partially confirmed by transcript evidence" /db_xref="WormBase:WBGene00000018" intron_pos 73:2 (1/13) intron_pos 127:0 (2/13) intron_pos 236:0 (3/13) intron_pos 350:2 (4/13) intron_pos 382:2 (5/13) intron_pos 529:2 (6/13) intron_pos 722:1 (7/13) intron_pos 798:1 (8/13) intron_pos 882:0 (9/13) intron_pos 1049:1 (10/13) intron_pos 1102:0 (11/13) intron_pos 1136:2 (12/13) intron_pos 1164:2 (13/13) BEGIN 1 MIMNPCFRER SQKRTKKRAK NRAKSRSTMY LSKVGDSSLA MSRSLPSVAL PMHYLHHKLA 61 ESICFITATI DSLEDLVACS SMNSVNNVHD MNTVSSSSSS SAPLFVALYD FHGVGEEQLS 121 LRKGDQVRIL GYNKNNEWCE ARLYSTRKND ASNQRRLGEI GWVPSNFIAP YNSLDKYTWY 181 HGKISRSDSE AILGSGITGS FLVRESETSI GQYTISVRHD GRVFHYRINV DNTEKMFITQ 241 EVKFRTLGEL VHHHSVHADG LICLLMYPAS KKDKGRGLFS LSPNAPDEWE LDRSEIIMHN 301 KLGGGQYGDV YEGYWKRHDC TIAVKALKED AMPLHEFLAE AAIMKDLHHK NLVRLLGVCT 361 HEAPFYIITE FMCNGNLLEY LRRTDKSLLP PIILVQMASQ IASGMSYLEA RHFIHRDLAA 421 RNCLVSEHNI VKIADFGLAR FMKEDTYTAH AGAKFPIKWT APEGLAFNTF SSKSDVWAFG 481 VLLWEIATYG MAPYPGVELS NVYGLLENGF RMDGPQGCPP SVYRLMLQCW NWSPSDRPRF 541 RDIHFNLENL ISSNSLNDEV QKQLKKNNDK KLESDKRRSN VRERSDSKSR HSSHHDRDRD 601 RESLHSRNSN PEIPNRSFIR TDDSVSFFNP STTSKVTSFR AQGPPFPPPP QQNTKPKLLK 661 SVLNSNARHA SEEFERNEQD DVVPLAEKNV RKAVTRLGGT MPKGQRIDAY LDSMRRVDSW 721 KESTDADNEG AGSSSLSRTV SNDSLDTLPL PDSMNSSTYV KMHPASGENV FLRQIRSKLK 781 KRSETPELDH IDSDTADETT KSEKSPFGSL NKSSIKYPIK NAPEFSENHS RVSPVPVPPS 841 RNASVSVRPD SKAEDSSDET TKDVGMWGPK HAVTRKIEIV KNDSYPNVEG ELKAKIRNLR 901 HVPKEESNTS SQEDLPLDAT DNTNDSIIVI PRDEKAKVRQ LVTQKVSPLQ HHRPFSLQCP 961 NNSTSSAISH SEHADSSETS SLSGVYEERM KPELPRKRSN GDTKVVPVTW IINGEKEPNG 1021 MARTKSLRDI TSKFEQLGTA STIESKIEEA VPYREHALEK KGTSKRFSML EGSNELKHVV 1081 PPRKNRNQDE SGSIDEEPVS KDMIVSLLKV IQKEFVNLFN LASSEITDEK LQQFVIMADN 1141 VQKLHSTCSV YAEQISPHSK FRFKELLSQL EIYNRQIKFS HNPRAKPVDD KLKMAFQDCF 1201 DQIMRLVDR //