LOCUS CAB55016.2 710 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans 3'-5' exonuclease domain-containing protein protein. ACCESSION BX284602-4277 PROTEIN_ID CAB55016.2 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279421) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="II" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="Y57A10A.13" /locus_tag="CELE_Y57A10A.13" /standard_name="Y57A10A.13" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00013256" /db_xref="EnsemblGenomes-Tr:Y57A10A.13" /db_xref="GOA:Q9NA69" /db_xref="InterPro:IPR002562" /db_xref="InterPro:IPR012337" /db_xref="UniProtKB/TrEMBL:Q9NA69" /db_xref="WormBase:WBGene00013256" intron_pos 23:0 (1/7) intron_pos 183:0 (2/7) intron_pos 219:2 (3/7) intron_pos 341:0 (4/7) intron_pos 385:1 (5/7) intron_pos 452:0 (6/7) intron_pos 660:0 (7/7) BEGIN 1 MSDFMSNTAA LQLLHNAVKS YEREVANFFA ANEKATSKYT GRFDFRQFAK KMFDPIPTAQ 61 LGQLYIEMLE ESHIYMHSHQ KSRVGANGYP HSFVSVPELL LNMILAYQLP QQRFVPAEKM 121 EEDGGKVEED GGAGGAGGSR KKRRNSAARK GKNVTINPRV VLGNELAAKL LEEMLKIPLA 181 PESKQWKTAK YVLCPSSCPQ QMEVFGEIIA KNTKSGLISF NALNYFMHDP ILNRYLDDPI 241 TILHALYIGP LQAPTVELFA TNRTDVFRQR CREVLRIALH ASKDPMTFTY SVPEFIDKNH 301 PDRCSYRDFV ETVTQLIRDL NGEHQGSTAI HTGWACAAIK KFGQKRYVDK TWKDENYYDL 361 IWTVLAQRPH LKKFVVDVLE KNFKDLDAAR FWRRMQPYQM NPTVIFNQNV IIVDPLQPTD 421 EFLNFPPTVR HIQMVTNEKE IRDLQMLLEY KVSREEKIYV GVDAEWSAYV SPSKATILQM 481 SLHDCIYIID LESYQISPQS YHHVLSYLFE TPEIVKIGFQ FGEDLHQLRA AFRNCVALYR 541 PNNVVCVGKL IMDLMDEIGK LENCDDFRKE WLPHLTDNET SSAANSSVEE QANETIDTNE 601 SMDEGDGGGS GIVVKKEESV KQQFLNKGLS FICEKLLGRP LDKTEQCSVW DRRPLRCLQL 661 RYAAMDAYCM LLLYEKCATI FAKLGINVND FVSKQSPIRI SLPLLSEEKL //