LOCUS       CAB5248253.1             581 aa    PRT              BCT 25-MAY-2020
DEFINITION  Mycobacterium tuberculosis variant bovis AF2122/97 PE-
            PGRS FAMILY PROTEIN [FIRST PART] protein.
ACCESSION   LT708304-552
PROTEIN_ID  CAB5248253.1
SOURCE      Mycobacterium tuberculosis variant bovis AF2122/97
  ORGANISM  Mycobacterium tuberculosis variant bovis AF2122/97
            Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
            Mycobacterium; Mycobacterium tuberculosis complex.
REFERENCE   1
  AUTHORS   Malone K.M.
  JOURNAL   Submitted (06-DEC-2016) to the INSDC. School of Veterinary
            Medicine, Tuberculosis Molecular Microbiology Research Group,
            University College Dublin, Tuberculosis Molecular Microbiology
            Research Group, School of Veterinary Medicine, University College
            Dublin, D4, Ireland
REFERENCE   2
  AUTHORS   Malone M K., Farrell D., Malone K.
  JOURNAL   Submitted (15-APR-2020) to the INSDC. School of Veterinary
            Medicine, Tuberculosis Molecular Microbiology Research Group,
            University College Dublin, Tuberculosis Molecular Microbiology
            Research Group, School of Veterinary Medicine,, University College
            Dublin, D4, Ireland
FEATURES             Qualifiers
     source          /organism="Mycobacterium tuberculosis variant bovis
                     AF2122/97"
                     /chromosome="Mycobacterium_bovis_AF212297"
                     /isolate="AF2122/97"
                     /mol_type="genomic DNA"
                     /isolation_source="Mycobacterium bovis subsp. bovis strain
                     AF2122/97. This strain is a fully virulent strain that was
                     isolated in 1997 in the UK from a cow suffering necrotic
                     lesions in lung and bronchomediastinal lymph nodes. The
                     strain was also reported to infect and persist in badgers
                     that are considered to be a significant source of bovine
                     infection."
                     /db_xref="taxon:233413"
     protein         /transl_table=11
                     /gene="PE_PGRS6a"
                     /locus_tag="BQ2027_MB0545"
                     /note="Mb0545, PE_PGRS6a, len: 581 aa. Equivalent to 5'
                     end of Rv0532, len: 594 aa, from Mycobacterium
                     tuberculosis strain H37Rv, (92.7% identity in 564 aa
                     overlap). Member of the Mycobacterium tuberculosis PE
                     family, PGRS subfamily of gly-rich proteins, similar to
                     others e.g. Y0DP_MYCTU|Q50615 from Mycobacterium
                     tuberculosis (498 aa), FASTA scores: opt: 1703, E(): 0,
                     (58.2% identity in 536 aa overlap).
                     REMARK-M.bovis-M.tuberculosis: In Mycobacterium
                     tuberculosis strain H37Rv, PE_PGRS6 exists as a single
                     gene. In Mycobacterium bovis, a frameshift due to a single
                     base insertion (*-t) splits PE_PGRS6 into 2 parts,
                     PE_PGRS6a and PE_PGRS6b, resulting in PE_PGRS6a having a
                     different COOH part. There is also a 84 bp and a 9 bp
                     (*-cggggccgg) insertion in PE_PGRS6a."
BEGIN
        1 MSNLLVTPEL VAAAAADLAG IGSAIGAANA AAGAPTMALL AAGADEVSAA VAAVFSSYAQ
       61 QYQALSAAAA AFHDQFVRAL AAGAGAYAGA EAANVEQQLL NAINAPTLAL LGRPLIGNGA
      121 DGAAGTGQAG GAGGLLYGNG GNGGSGAAGQ AGGAGGAAGL IGHGGTGGVG GTGAAGGAGG
      181 TGGWLFGNGG AGGTGGAVTG VSTTGGPGGH GGDAGLYGFG GAGGAGGFGQ SGAAGGAGGA
      241 GGAGGWLYGD GGDGGAGGNG GNESGTGVSG VGGVGGAGGA GGLLFGNGGD GGVGGDGGDG
      301 SSTQDSGGDG GAGGAGGAGG WLLGNGGAGG AGGAASIKVA TGGLGGDGGD AGLFGFGGDG
      361 GWGGRGVDAR FGAAGGAAGA GGAGGWLYGD GGAGGVGGVG GAVFSLSSGD GGAGGAGGGG
      421 GWLFGNGGDG GAGGGGGGRF GSGSGAGGDG AVGGAGGAGA WFGNGGAGGV GGGGGRGTTA
      481 IGGDGGAGGA GGAGGWLYGD GGAGGAGGGG GRGGTGNDGG DGGDGGRGGD AQLLGNGGDG
      541 GAGGAGGPAG FGASPGAGAA GGGGGAGGSL FGSPGTTGPH G
//