LOCUS       CAB5248146.1             240 aa    PRT              BCT 25-MAY-2020
DEFINITION  Mycobacterium tuberculosis variant bovis AF2122/97 periplasmic
            superoxide dismutase [cu-zn] sodc protein.
ACCESSION   LT708304-445
PROTEIN_ID  CAB5248146.1
SOURCE      Mycobacterium tuberculosis variant bovis AF2122/97
  ORGANISM  Mycobacterium tuberculosis variant bovis AF2122/97
            Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
            Mycobacterium; Mycobacterium tuberculosis complex.
REFERENCE   1
  AUTHORS   Malone K.M.
  JOURNAL   Submitted (06-DEC-2016) to the INSDC. School of Veterinary
            Medicine, Tuberculosis Molecular Microbiology Research Group,
            University College Dublin, Tuberculosis Molecular Microbiology
            Research Group, School of Veterinary Medicine, University College
            Dublin, D4, Ireland
REFERENCE   2
  AUTHORS   Malone M K., Farrell D., Malone K.
  JOURNAL   Submitted (15-APR-2020) to the INSDC. School of Veterinary
            Medicine, Tuberculosis Molecular Microbiology Research Group,
            University College Dublin, Tuberculosis Molecular Microbiology
            Research Group, School of Veterinary Medicine,, University College
            Dublin, D4, Ireland
FEATURES             Qualifiers
     source          /organism="Mycobacterium tuberculosis variant bovis
                     AF2122/97"
                     /chromosome="Mycobacterium_bovis_AF212297"
                     /isolate="AF2122/97"
                     /mol_type="genomic DNA"
                     /isolation_source="Mycobacterium bovis subsp. bovis strain
                     AF2122/97. This strain is a fully virulent strain that was
                     isolated in 1997 in the UK from a cow suffering necrotic
                     lesions in lung and bronchomediastinal lymph nodes. The
                     strain was also reported to infect and persist in badgers
                     that are considered to be a significant source of bovine
                     infection."
                     /db_xref="taxon:233413"
     protein         /transl_table=11
                     /gene="sodC"
                     /locus_tag="BQ2027_MB0440"
                     /note="Mb0440, sodC, len: 240 aa. Equivalent to Rv0432,
                     len: 240 aa, from Mycobacterium tuberculosis strain H37Rv,
                     (100.0% identity in 240 aa overlap). Probable sodC,
                     periplasmic superoxide dismutase [Cu-Zn] (EC 1.15.1.1),
                     equivalent to CAC30880.1|AL583923 superoxide dismutase
                     precursor (Cu-Zn) from Mycobacterium leprae (240 aa); and
                     AAK20038.1|AF326234_1 copper zinc superoxide dismutase
                     from Mycobacterium avium subsp. paratuberculosis (226 aa).
                     Also similar to others e.g. SODC_PHOLE|P00446 superoxide
                     dismutase precursor (cu-zn) from Photobacterium leiognathi
                     (173 aa), FASTA scores: opt: 214, E(): 5.2 e-06, (36.5%
                     identity in 181 aa overlap). Contains PS00013 Prokaryotic
                     membrane lipoprotein lipid attachment site. BELONGS TO THE
                     CU-ZN SUPEROXIDE DISMUTASE FAMILY. Possibly localized in
                     periplasm, membrane-bound. Protein product from Mb0440
                     detected using shotgun mass spectrometry and SWATH mass
                     spectrometry. Mb0440 found to be expressed during
                     exponential growth in Sauton's minimal media by
                     RNA-sequencing."
BEGIN
        1 MPKPADHRNH AAVSTSVLSA LFLGAGAALL SACSSPQHAS TVPGTTPSIW TGSPAPSGLS
       61 GHDEESPGAQ SLTSTLTAPD GTKVATAKFE FANGYATVTI ATTGVGKLTP GFHGLHIHQV
      121 GKCEPNSVAP TGGAPGNFLS AGGHYHVPGH TGTPASGDLA SLQVRGDGSA MLVTTTDAFT
      181 MDDLLSGAKT AIIIHAGADN FANIPPERYV QVNGTPGPDE TTLTTGDAGK RVACGVIGSG
//