LOCUS       CAB5248019.1            1985 aa    PRT              BCT 25-MAY-2020
DEFINITION  Mycobacterium tuberculosis variant bovis AF2122/97 ppe
            family protein ppe6 protein.
ACCESSION   LT708304-318
PROTEIN_ID  CAB5248019.1
SOURCE      Mycobacterium tuberculosis variant bovis AF2122/97
  ORGANISM  Mycobacterium tuberculosis variant bovis AF2122/97
            Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
            Mycobacterium; Mycobacterium tuberculosis complex.
REFERENCE   1
  AUTHORS   Malone K.M.
  JOURNAL   Submitted (06-DEC-2016) to the INSDC. School of Veterinary
            Medicine, Tuberculosis Molecular Microbiology Research Group,
            University College Dublin, Tuberculosis Molecular Microbiology
            Research Group, School of Veterinary Medicine, University College
            Dublin, D4, Ireland
REFERENCE   2
  AUTHORS   Malone M K., Farrell D., Malone K.
  JOURNAL   Submitted (15-APR-2020) to the INSDC. School of Veterinary
            Medicine, Tuberculosis Molecular Microbiology Research Group,
            University College Dublin, Tuberculosis Molecular Microbiology
            Research Group, School of Veterinary Medicine,, University College
            Dublin, D4, Ireland
FEATURES             Qualifiers
     source          /organism="Mycobacterium tuberculosis variant bovis
                     AF2122/97"
                     /chromosome="Mycobacterium_bovis_AF212297"
                     /isolate="AF2122/97"
                     /mol_type="genomic DNA"
                     /isolation_source="Mycobacterium bovis subsp. bovis strain
                     AF2122/97. This strain is a fully virulent strain that was
                     isolated in 1997 in the UK from a cow suffering necrotic
                     lesions in lung and bronchomediastinal lymph nodes. The
                     strain was also reported to infect and persist in badgers
                     that are considered to be a significant source of bovine
                     infection."
                     /db_xref="taxon:233413"
     protein         /transl_table=11
                     /gene="PPE6"
                     /locus_tag="BQ2027_MB0313C"
                     /note="Mb0313c, PPE6, len: 1985 aa. Equivalent to 5' end
                     of Rv0305c, len: 963 aa, from Mycobacterium tuberculosis
                     strain H37Rv, (100.0% identity in 809 aa overlap). Member
                     of the Mycobacterium tuberculosis PE family (PPE, MPTR),
                     similar to others e.g. Y04H_MYCTU|Q10778 from M.
                     tuberculosis (734 aa), FASTA scores: opt: 1340, E(): 0,
                     (40.9% identity in 815 aa overlap); Z95324|MTY13E10_16
                     from Mycobacterium tuberculosis (1443 aa), FASTA scores:
                     E(): 0, (50.6% identity in 1403 aa overlap);
                     Y04H_MYCTU|Q10778 from Mycobacterium tuberculosis (734
                     aa), FASTA scores: opt: 989, E(): 0, (42.3% identity in
                     522 aa overlap). REMARK-M.bovis-M.tuberculosis: In
                     Mycobacterium tuberculosis strain H37Rv, PPE5 and PPE6
                     exist as separate genes. In Mycobacterium bovis, a single
                     base deletion (t-*) resulting in the absence of a stop
                     codon leads to a longer product. The second part of this
                     CDS shares homology with the 5' end of Rv0304c/PPE5.
                     Mb0313c found to be expressed during exponential growth in
                     Sauton's minimal media by RNA-sequencing."
BEGIN
        1 MDFVVSAPEV NSLRMYLGAG SGPMLAAAAA WDGLADELAV AASWFGSVTS GLADAAWRGP
       61 AAVAMARAVA PYLGWLISAT AQAEQAAAQA RVAVATFEAA RAATVHPAIV AANRAVLVSL
      121 VSSNLLGFNA PAIAATEAAY ERMWAQDVAA MVGYHAGASA AVSALMPFTQ QLKKLAGLSE
      181 RLTSAAAAAA GPPSAAGFNL GLANVGANNV GNGNVGVFNV GFGNLGSYNL GFANLGSDNL
      241 GLANLGGHNI GFANTGSNNV GFGNTGSNNV GIGLTGNGQI GFGSFNSGSH NIGLFNSGSG
      301 NVGLFNSGTG NFGIGNSGTG NFGLGNTGST NTGWFNTGDV NTGGFNPGSY NTGNFNTGNY
      361 NTGSFNAGNY NTGYFNTGDY NTGVANTGNV NTGAFIAGNY SNGVLWRGDY QGLIGADIAL
      421 EIPAIPINAQ LFSMPIHQVM VMPGSVMTIP GMRLPFTSIV PFVVYYGPVE LPQSTLTLPT
      481 VTITVGGPTT TIDGNLTGMV GGVSIPLIKI PAAPGFGNST TSPSSGFFNA GAGTASGFGN
      541 FGGGASGFWN LASATSGLSG FGNVGALGSG VANVGNTISG LYNTSTSNLA TPAFNSGLLH
      601 HSVGTMTLNF GLANVGGNNV GGANAGIFNV GLANLGDYNI GFGNLGGDNL GFAHAGSYNI
      661 GFANTGSNNL GFANTGDNNI GFANIGSNNI GIGLTGSGQI GFGSLNSGSH NIGLFNSGDG
      721 NIGLFNSGSG NFGIGNAGTG NWGIGNSGAG NFGIGNAGST NTGLFNSGDL NTGSLNPGSY
      781 NTGSVNTGSV NTGGFNAGNY NTGYFNTGDY NTGMANTGNI NTGAFISGNH SNGLLWRGDN
      841 QGLIDLAIGV DIPEIPIVSV DVNIPIHIPI TASFTDIVYS GLDLPPNTAV TVIFFGPVDI
      901 DPFTVPVIRI TGPTPVVMVG GPTTAINIGA TVGVDAINIP IIHIPATPGF GNSTGGLSSG
      961 FFNSGAGSAS GFGNFGGAAS GFMNLVSTTS GMSGFLNVGA LGSGVANVGN TISGIYNVGT
     1021 SDLSTPAVNS GLANIGTNIA GLLRDGAGTA AINLGLANHG NLNVGFASLG GFNFGGATIG
     1081 HNNVGIGNTG IFDVGLANLG SYNIGFGNLG DDNLGFGNFG SYNIGFGNVG NDNLGFANAG
     1141 GGNIGFANTG SNNVGFGNTG SNNVGIGLTG NGQIGFGSFN SGSGNIGLFN SGSNNIGFFN
     1201 SGSGNFGIAN SGSFNTGIGN TGNTNTGLFN SGDVNTGAFN PGSFNTGSFN TGSFNTGGFN
     1261 PGNTNTGYLN IGNYNTGIAN TGDVDTGAFI TGNYSNGLFL SGDYQGLVGL NLVIDMPLPI
     1321 SLGVNIPIDI PITASAGNIT LMGVTIPPTG DIVLSSIAGQ RAHFGPITIP NITVVGPTTT
     1381 VAIGGPNTAI TITGGGAIRI PLISIPAAPG FGNSTTNPSS GFFNTGAGGA SGFGNFGGAN
     1441 SGFWNLASAT SGASGLLNVG ALGSGLANVG TTVSGFYNTS TSDLATPAFN SGLANISTSI
     1501 AGLLRDSTGT MVLNLGLANH GTLNVGIANL GDYNIGFANL GSANFGSANI GGNNIGGANT
     1561 GIFDIGLANL GSYNIGFGNF GDDNLGFGNL GSYNVGFGNL GNDNLGFANT GSNNIGFANT
     1621 GSNNIGIGLT GDGQIGFGSL NSGSGNIGLF NSGSGNIGFF NSGNGNVGIG NTGTANFGLG
     1681 NTGSTNTGFF NSGDVNTGIG NTGSFNTGSF NPGDSNTGDF NPGSYNTGLG NTGDVDTGAF
     1741 ISGSYSNGFL WSGNYQGLIG LHAALAIPEI ALTFGVDIPI HIPINIDAGV VTLQGFSIVA
     1801 AENNIDFTPI IIPTINITLP TAAITVGGPT TSIGITASAG IGSITIPIID IPATSGFGNS
     1861 TTSPSSGFFN SGAGSASGFL NVVAGASGIS GYLNVGALGS GVTNVGHTVS GFYNASALDL
     1921 VTPAFASGLM RDGMGTMTLN LGLANLGSNN AGFGNTGIFD VGVANLGNYN IGFGNFGDDN
     1981 LALPT
//