LOCUS CAB5248019.1 1985 aa PRT BCT 25-MAY-2020 DEFINITION Mycobacterium tuberculosis variant bovis AF2122/97 ppe family protein ppe6 protein. ACCESSION LT708304-318 PROTEIN_ID CAB5248019.1 SOURCE Mycobacterium tuberculosis variant bovis AF2122/97 ORGANISM Mycobacterium tuberculosis variant bovis AF2122/97 Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex. REFERENCE 1 AUTHORS Malone K.M. JOURNAL Submitted (06-DEC-2016) to the INSDC. School of Veterinary Medicine, Tuberculosis Molecular Microbiology Research Group, University College Dublin, Tuberculosis Molecular Microbiology Research Group, School of Veterinary Medicine, University College Dublin, D4, Ireland REFERENCE 2 AUTHORS Malone M K., Farrell D., Malone K. JOURNAL Submitted (15-APR-2020) to the INSDC. School of Veterinary Medicine, Tuberculosis Molecular Microbiology Research Group, University College Dublin, Tuberculosis Molecular Microbiology Research Group, School of Veterinary Medicine,, University College Dublin, D4, Ireland FEATURES Qualifiers source /organism="Mycobacterium tuberculosis variant bovis AF2122/97" /chromosome="Mycobacterium_bovis_AF212297" /isolate="AF2122/97" /mol_type="genomic DNA" /isolation_source="Mycobacterium bovis subsp. bovis strain AF2122/97. This strain is a fully virulent strain that was isolated in 1997 in the UK from a cow suffering necrotic lesions in lung and bronchomediastinal lymph nodes. The strain was also reported to infect and persist in badgers that are considered to be a significant source of bovine infection." /db_xref="taxon:233413" protein /transl_table=11 /gene="PPE6" /locus_tag="BQ2027_MB0313C" /note="Mb0313c, PPE6, len: 1985 aa. Equivalent to 5' end of Rv0305c, len: 963 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 809 aa overlap). Member of the Mycobacterium tuberculosis PE family (PPE, MPTR), similar to others e.g. Y04H_MYCTU|Q10778 from M. tuberculosis (734 aa), FASTA scores: opt: 1340, E(): 0, (40.9% identity in 815 aa overlap); Z95324|MTY13E10_16 from Mycobacterium tuberculosis (1443 aa), FASTA scores: E(): 0, (50.6% identity in 1403 aa overlap); Y04H_MYCTU|Q10778 from Mycobacterium tuberculosis (734 aa), FASTA scores: opt: 989, E(): 0, (42.3% identity in 522 aa overlap). REMARK-M.bovis-M.tuberculosis: In Mycobacterium tuberculosis strain H37Rv, PPE5 and PPE6 exist as separate genes. In Mycobacterium bovis, a single base deletion (t-*) resulting in the absence of a stop codon leads to a longer product. The second part of this CDS shares homology with the 5' end of Rv0304c/PPE5. Mb0313c found to be expressed during exponential growth in Sauton's minimal media by RNA-sequencing." BEGIN 1 MDFVVSAPEV NSLRMYLGAG SGPMLAAAAA WDGLADELAV AASWFGSVTS GLADAAWRGP 61 AAVAMARAVA PYLGWLISAT AQAEQAAAQA RVAVATFEAA RAATVHPAIV AANRAVLVSL 121 VSSNLLGFNA PAIAATEAAY ERMWAQDVAA MVGYHAGASA AVSALMPFTQ QLKKLAGLSE 181 RLTSAAAAAA GPPSAAGFNL GLANVGANNV GNGNVGVFNV GFGNLGSYNL GFANLGSDNL 241 GLANLGGHNI GFANTGSNNV GFGNTGSNNV GIGLTGNGQI GFGSFNSGSH NIGLFNSGSG 301 NVGLFNSGTG NFGIGNSGTG NFGLGNTGST NTGWFNTGDV NTGGFNPGSY NTGNFNTGNY 361 NTGSFNAGNY NTGYFNTGDY NTGVANTGNV NTGAFIAGNY SNGVLWRGDY QGLIGADIAL 421 EIPAIPINAQ LFSMPIHQVM VMPGSVMTIP GMRLPFTSIV PFVVYYGPVE LPQSTLTLPT 481 VTITVGGPTT TIDGNLTGMV GGVSIPLIKI PAAPGFGNST TSPSSGFFNA GAGTASGFGN 541 FGGGASGFWN LASATSGLSG FGNVGALGSG VANVGNTISG LYNTSTSNLA TPAFNSGLLH 601 HSVGTMTLNF GLANVGGNNV GGANAGIFNV GLANLGDYNI GFGNLGGDNL GFAHAGSYNI 661 GFANTGSNNL GFANTGDNNI GFANIGSNNI GIGLTGSGQI GFGSLNSGSH NIGLFNSGDG 721 NIGLFNSGSG NFGIGNAGTG NWGIGNSGAG NFGIGNAGST NTGLFNSGDL NTGSLNPGSY 781 NTGSVNTGSV NTGGFNAGNY NTGYFNTGDY NTGMANTGNI NTGAFISGNH SNGLLWRGDN 841 QGLIDLAIGV DIPEIPIVSV DVNIPIHIPI TASFTDIVYS GLDLPPNTAV TVIFFGPVDI 901 DPFTVPVIRI TGPTPVVMVG GPTTAINIGA TVGVDAINIP IIHIPATPGF GNSTGGLSSG 961 FFNSGAGSAS GFGNFGGAAS GFMNLVSTTS GMSGFLNVGA LGSGVANVGN TISGIYNVGT 1021 SDLSTPAVNS GLANIGTNIA GLLRDGAGTA AINLGLANHG NLNVGFASLG GFNFGGATIG 1081 HNNVGIGNTG IFDVGLANLG SYNIGFGNLG DDNLGFGNFG SYNIGFGNVG NDNLGFANAG 1141 GGNIGFANTG SNNVGFGNTG SNNVGIGLTG NGQIGFGSFN SGSGNIGLFN SGSNNIGFFN 1201 SGSGNFGIAN SGSFNTGIGN TGNTNTGLFN SGDVNTGAFN PGSFNTGSFN TGSFNTGGFN 1261 PGNTNTGYLN IGNYNTGIAN TGDVDTGAFI TGNYSNGLFL SGDYQGLVGL NLVIDMPLPI 1321 SLGVNIPIDI PITASAGNIT LMGVTIPPTG DIVLSSIAGQ RAHFGPITIP NITVVGPTTT 1381 VAIGGPNTAI TITGGGAIRI PLISIPAAPG FGNSTTNPSS GFFNTGAGGA SGFGNFGGAN 1441 SGFWNLASAT SGASGLLNVG ALGSGLANVG TTVSGFYNTS TSDLATPAFN SGLANISTSI 1501 AGLLRDSTGT MVLNLGLANH GTLNVGIANL GDYNIGFANL GSANFGSANI GGNNIGGANT 1561 GIFDIGLANL GSYNIGFGNF GDDNLGFGNL GSYNVGFGNL GNDNLGFANT GSNNIGFANT 1621 GSNNIGIGLT GDGQIGFGSL NSGSGNIGLF NSGSGNIGFF NSGNGNVGIG NTGTANFGLG 1681 NTGSTNTGFF NSGDVNTGIG NTGSFNTGSF NPGDSNTGDF NPGSYNTGLG NTGDVDTGAF 1741 ISGSYSNGFL WSGNYQGLIG LHAALAIPEI ALTFGVDIPI HIPINIDAGV VTLQGFSIVA 1801 AENNIDFTPI IIPTINITLP TAAITVGGPT TSIGITASAG IGSITIPIID IPATSGFGNS 1861 TTSPSSGFFN SGAGSASGFL NVVAGASGIS GYLNVGALGS GVTNVGHTVS GFYNASALDL 1921 VTPAFASGLM RDGMGTMTLN LGLANLGSNN AGFGNTGIFD VGVANLGNYN IGFGNFGDDN 1981 LALPT //