LOCUS CAB5247993.1 831 aa PRT BCT 25-MAY-2020 DEFINITION Mycobacterium tuberculosis variant bovis AF2122/97 pe- pgrs family protein pe_pgrs4 protein. ACCESSION LT708304-292 PROTEIN_ID CAB5247993.1 SOURCE Mycobacterium tuberculosis variant bovis AF2122/97 ORGANISM Mycobacterium tuberculosis variant bovis AF2122/97 Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex. REFERENCE 1 AUTHORS Malone K.M. JOURNAL Submitted (06-DEC-2016) to the INSDC. School of Veterinary Medicine, Tuberculosis Molecular Microbiology Research Group, University College Dublin, Tuberculosis Molecular Microbiology Research Group, School of Veterinary Medicine, University College Dublin, D4, Ireland REFERENCE 2 AUTHORS Malone M K., Farrell D., Malone K. JOURNAL Submitted (15-APR-2020) to the INSDC. School of Veterinary Medicine, Tuberculosis Molecular Microbiology Research Group, University College Dublin, Tuberculosis Molecular Microbiology Research Group, School of Veterinary Medicine,, University College Dublin, D4, Ireland FEATURES Qualifiers source /organism="Mycobacterium tuberculosis variant bovis AF2122/97" /chromosome="Mycobacterium_bovis_AF212297" /isolate="AF2122/97" /mol_type="genomic DNA" /isolation_source="Mycobacterium bovis subsp. bovis strain AF2122/97. This strain is a fully virulent strain that was isolated in 1997 in the UK from a cow suffering necrotic lesions in lung and bronchomediastinal lymph nodes. The strain was also reported to infect and persist in badgers that are considered to be a significant source of bovine infection." /db_xref="taxon:233413" protein /transl_table=11 /gene="PE_PGRS4" /locus_tag="BQ2027_MB0287C" /note="Mb0287c, PE_PGRS4, len: 831 aa. Equivalent to Rv0279c, len: 837 aa, from Mycobacterium tuberculosis strain H37Rv, (97.4% identity in 837 aa overlap). Member of the Mycobacterium tuberculosis PE family, PGRS subfamily of gly-rich proteins, similar to many e.g. Z95890|MTCY28_25|Rv0278c from Mycobacterium tuberculosis (914 aa), FASTA scores: opt: 2677, E(): 0, (64.5% identity in 926 aa overlap). REMARK-M.bovis-M.tuberculosis: In Mycobacterium bovis, 2 deletions each of 9 bp (ccgccggcg-* and cccgccggc-*), leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv (831 aa versus 837 aa). Protein product from Mb0287c detected using shotgun mass spectrometry. Mb0287c found to be expressed during exponential growth in Sauton's minimal media by RNA-sequencing (TPM > 20)." BEGIN 1 MSFVIAAPEV IAAAATDLAS LESSIAAANA AAAANTTALL AAGADEVSTA VAALFGAHGQ 61 AYQALSAQAQ AFHAQFVQAL TSGGGAYAAA EAAATSPLLA PINEFFLANT GRPLIGNGAN 121 GAPGTGADGA PGGWLIGNGG AGGSGAAGVN GGAGGNGGAG GLIGNGGAGG AGGRASTGTG 181 GAGGAAGMLF GAAGVGGPGG FAAAFGATGG AGGAGGNGGL FADGGVGGAG GATDAGTGGA 241 GGSGGNGGLF GAGGTGGPGG FGIFGGGAGG DGGSGGLFGA GGTGGSGGTS IINVGGNGGA 301 GGDAGMLSLG AAGGAGGSGG SSPDGGGGAG GIGGDGGTLF GSGGAGGVGG LGFDAGGAGG 361 AGGKAGLLSG AGGAGGAGGG SFAGAGGTGG AGGAPGLVGN AGNGGNGGAS ANGAGAAGGA 421 GGSGVLIGNG GNGGSGGTGA PAGTAGAGGL GGQLLGRDGF NAPASTPLHT LQQQILNAIN 481 EPTQALTGRP LIGNGANGTP GTGADGGAGG WLFGNGGNGG HGATGADGGD GGSGGAGGIL 541 SGIGGTGGSG GIGTTGQGGT GGTGGAALLI GSGGTGGSGG FGLDTGGAGG RGGDAGLFLG 601 AAGTGGQAAL SQNFIGAGGT AGAGGTGGLF ANGGAGGFGA NGGTGGNGLL FGAGGTGGAG 661 TLGADGGAGG HGGLFGAGGT GGAGGSSGGT FGGNGGSGGN AGLLALGASG GAGGSGGSAL 721 NVGGTGGVGG NGGSGGSLFG FGGAGGTGGS SGIGSSGGTG GDGGTAGVFG NGGDGGAGGF 781 GTGAGGTGGT GGNAVLIGNG GNGGNGGKAG GTPGAGGTSG LIIGENGLNG L //