LOCUS       CAB5247822.1             251 aa    PRT              BCT 25-MAY-2020
DEFINITION  Mycobacterium tuberculosis variant bovis AF2122/97 probable
            l,d-transpeptidase ldta protein.
ACCESSION   LT708304-121
PROTEIN_ID  CAB5247822.1
SOURCE      Mycobacterium tuberculosis variant bovis AF2122/97
  ORGANISM  Mycobacterium tuberculosis variant bovis AF2122/97
            Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
            Mycobacterium; Mycobacterium tuberculosis complex.
REFERENCE   1
  AUTHORS   Malone K.M.
  JOURNAL   Submitted (06-DEC-2016) to the INSDC. School of Veterinary
            Medicine, Tuberculosis Molecular Microbiology Research Group,
            University College Dublin, Tuberculosis Molecular Microbiology
            Research Group, School of Veterinary Medicine, University College
            Dublin, D4, Ireland
REFERENCE   2
  AUTHORS   Malone M K., Farrell D., Malone K.
  JOURNAL   Submitted (15-APR-2020) to the INSDC. School of Veterinary
            Medicine, Tuberculosis Molecular Microbiology Research Group,
            University College Dublin, Tuberculosis Molecular Microbiology
            Research Group, School of Veterinary Medicine,, University College
            Dublin, D4, Ireland
FEATURES             Qualifiers
     source          /organism="Mycobacterium tuberculosis variant bovis
                     AF2122/97"
                     /chromosome="Mycobacterium_bovis_AF212297"
                     /isolate="AF2122/97"
                     /mol_type="genomic DNA"
                     /isolation_source="Mycobacterium bovis subsp. bovis strain
                     AF2122/97. This strain is a fully virulent strain that was
                     isolated in 1997 in the UK from a cow suffering necrotic
                     lesions in lung and bronchomediastinal lymph nodes. The
                     strain was also reported to infect and persist in badgers
                     that are considered to be a significant source of bovine
                     infection."
                     /db_xref="taxon:233413"
     protein         /transl_table=11
                     /gene="ldta"
                     /locus_tag="BQ2027_MB0120C"
                     /note="Mb0120c, -, len: 251 aa. Equivalent to Rv0116c,
                     len: 251 aa, from Mycobacterium tuberculosis strain H37Rv,
                     (100.0% identity in 251 aa overlap). Possible conserved
                     membrane protein, showing similarity to several
                     hypothetical mycobacterial proteins e.g. Rv1433 from
                     Mycobacterium tuberculosis (271 aa); and
                     Q49706|B1496_F2_81|U00013 from Mycobacterium leprae (271
                     aa); to the C-terminal regions of others like Rv0192 from
                     Mycobacterium tuberculosis (366 aa), FASTA scores: opt:
                     451, E(): 1.7e-21, (46.7% identity in 270 aa overlap); and
                     Rv0192|Z97050|MTCI28_32 from Mycobacterium tuberculosis
                     cosmid (366 aa), FASTA scores: opt: 699, E(): 0, (45.7%
                     identity in 221 aa overlap). TBparse score is 0.932.
                     Protein product from Mb0120c detected using SWATH mass
                     spectrometry. Mb0120c found to be expressed during
                     exponential growth in Sauton's minimal media by
                     RNA-sequencing."
                     /experiment="experimental evidence, no additional details
                     recorded"
BEGIN
        1 MRRVVRYLSV VVAITLMLTA ESVSIATAAV PPLQPIPGVA SVSPANGAVV GVAHPVVVTF
       61 TTPVTDRRAV ERSIRISTPH NTTGHFEWVA SNVVRWVPHR YWPPHTRVSV GVQELTEGFE
      121 TGDALIGVAS ISAHTFTVSR NGEVLRTMPA SLGKPSRPTP IGSFHAMSKE RTVVMDSRTI
      181 GIPLNSSDGY LLTAHYAVRV TWSGVYVHSA PWSVNSQGYA NVSHGCINLS PDNAAWYFDA
      241 VTVGDPIEVV G
//