LOCUS CAB15366.1 779 aa PRT BCT 08-FEB-2018
DEFINITION Bacillus subtilis subsp. subtilis str. 168 ribonuclease R protein.
ACCESSION AL009126-3543
PROTEIN_ID CAB15366.1
SOURCE Bacillus subtilis subsp. subtilis str. 168
ORGANISM Bacillus subtilis subsp. subtilis str. 168
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
REFERENCE 1 (bases 1 to 4215606)
AUTHORS Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G.,
Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S.,
Borriss R., Boursier L., Brans A., Braun M., Brignell S.C.,
Bron S., Brouillet S., Bruschi C.V., Caldwell B., Capuano V.,
Carter N.M., Choi S.K., Codani J.J., Connerton I.F., Cummings N.J.,
Daniel R.A., Denizot F., Devine K.M., Dusterhoft A., Ehrlich S.D.,
Emmerson P.T., Entian K.D., Errington J., Fabret C., Ferrari E.,
Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A.,
Galleron N., Ghim S.Y., Glaser P., Goffeau A., Golightly E.J.,
Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R.,
Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.F.,
Itaya M., Jones L., Joris B., Karamata D., Kasahara Y.,
Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P.,
Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A.,
Lardinois S., Lauber J., Lazarevic V., Lee S.M., Levine A., Liu H.,
Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P.,
Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M.,
Ogawa K., Ogiwara A., Oudega B., Park S.H., Parro V., Pohl T.M.,
Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P.,
Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M.,
Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T.,
Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J.,
Sekowska A., Seror S.J., Serror P., Shin B.S., Soldo B.,
Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K.,
Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A.,
Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A.,
Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T.,
Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K.,
Yoshida K., Yoshikawa H.F., Zumstein E., Yoshikawa H., Danchin A.
TITLE The complete genome sequence of the gram-positive bacterium
Bacillus subtilis
JOURNAL Nature 390(6657), 249-256(1997).
PUBMED 9384377
REFERENCE 2 (bases 1 to 4215606)
AUTHORS Barbe V., Cruveiller S., Kunst F., Lenoble P., Meurice G.,
Sekowska A., Vallenet D., Wang T., Moszer I., Medigue C.,
Danchin A.
TITLE From a consortium sequence to a unified sequence: the Bacillus
subtilis 168 reference genome a decade later
JOURNAL Microbiology (Reading, Engl.) 155(Pt 6), 1758-1775(2009).
PUBMED 19383706
REFERENCE 3 (bases 1 to 4215606)
AUTHORS Belda E., Sekowska A., Le Fevre F., Mornico D., Morgat A.,
Ouzounis C., Vallenet D., Medigue C., Danchin A.
TITLE An updated metabolic view of the Bacillus subtilis 168 genome
JOURNAL Microbiology (Reading, Engl.) 159(Pt 4), 757-770(2013).
PUBMED 23429746
REFERENCE 4 (bases 1 to 4215606)
AUTHORS Kunst F., Ogasawara N., Yoshikawa H., Danchin A.
JOURNAL Submitted (18-NOV-1997) to the INSDC. I. Moszer, A. Danchin,
Genetique des Genomes Bacteriens, Institut Pasteur, 28 rue du
Docteur Roux, 75724 Paris Cedex 15, FRANCE. E-mail:
moszer@pasteur.fr, antoine.danchin@normalesup.org Phone: +33 (0)1
45 68 84 41, Fax: +33 (0)1 45 68 89 48
REFERENCE 5 (bases 1 to 4215606)
AUTHORS Genoscope - C.E.A.
CONSRTM Institut Pasteur and Genoscope
JOURNAL Submitted (29-JAN-2009) to the INSDC. Genoscope - Centre National
de Sequencage : BP 191 91006 EVRY cedex - FRANCE (E-mail :
seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr)
REFERENCE 6 (bases 1 to 4215606)
AUTHORS Genoscope - C.E.A.
CONSRTM AMAbiotics and Genoscope
JOURNAL Submitted (24-JAN-2013) to the INSDC. A. Danchin, AMAbiotics, Bldg
G1, 2, rue Gaston Cremieux, 91000 EVRY
antoine.danchin@normalesup.org Bldg G1 Genoscope / CEA
(Commissariat a l'energie atomique et aux energies alternatives):
BP 191 91006 EVRY cedex - FRANCE (E-mail: seqref@genoscope.cns.fr -
Web: www.genoscope.cns.fr)
REFERENCE 8
AUTHORS Borriss R., Danchin A., Harwood C.R., Medigue C., Rocha E.P.C.,
Sekowska A., Vallenet D.
TITLE Bacillus subtilis, the model Gram-positive bacterium: 20 years of
annotation refinement
JOURNAL Microb Biotechnol 11(1), 3-17(2018).
PUBMED 29280348
COMMENT On or before Mar 17, 2009 this sequence version replaced
gi:32468687, gi:32468690, gi:32468695, gi:32468704, gi:32468715,
gi:32468723, gi:32468738, gi:32468743, gi:32468745, gi:32468758,
gi:32468767, gi:32468778, gi:32468787, gi:32468796, gi:32468802,
gi:32468809, gi:32468813, gi:32468825, gi:32468830, gi:32468833,
gi:32468840, gi:38680335.
Annotation results relative to BLAST similarities, COG
assignations, enzymatic function prediction (PRIAM software), TMHMM
and SignalP predictions, and synteny conservation (Syntonizer
software) are available in the MicroScope annotation platform
http://www.genoscope.cns.fr/agc/microscope.
The large cluster comprising the i, h and g rDNA regions could not
be properly resolved, we therefore incorporated the original
sequence of rRNAihg in the final assembly.
FEATURES Qualifiers
source /organism="Bacillus subtilis subsp. subtilis str. 168"
/sub_species="subtilis"
/strain="168"
/mol_type="genomic DNA"
/db_xref="taxon:224308"
protein /transl_table=11
/gene="rnr"
/locus_tag="BSU_33610"
/old_locus_tag="BSU33610"
/function="16.6: Maintain"
/function="16.3: Control"
/function="16.11: Scavenge (Catabolism)"
/EC_number="3.1.13.1"
/note="Evidence 1a: Function from experimental evidences
in the studied strain; PubMedId: 12399495, 15805522,
15983136, 19215769, 22333191; Product type e: enzyme"
/db_xref="EnsemblGenomes-Gn:BSU33610"
/db_xref="EnsemblGenomes-Tr:CAB15366"
/db_xref="GOA:O32231"
/db_xref="InterPro:IPR001900"
/db_xref="InterPro:IPR003029"
/db_xref="InterPro:IPR004476"
/db_xref="InterPro:IPR011129"
/db_xref="InterPro:IPR011805"
/db_xref="InterPro:IPR012340"
/db_xref="InterPro:IPR013223"
/db_xref="InterPro:IPR022966"
/db_xref="InterPro:IPR022967"
/db_xref="InterPro:IPR040476"
/db_xref="SubtiList:BG14065"
/db_xref="UniProtKB/Swiss-Prot:O32231"
/experiment="publication(s) with functional evidences,
PMID:12399495, 15805522, 15983136, 19215769, 22333191"
BEGIN
1 MEKEAFMEKL LSFMKEEAYK PLTVQELEEM LNITEAEEFK ELVKALVALE EKGLIVRTRS
61 DRYGIPEKMN LIKGKISAHA KGFAFLLPED TSLSDVFIPP NELNTAMNGD IVMVRLNSQS
121 SGSRQEGTVI RILERAIQRV VGTYTETRNF GFVIPDDKKI TSDIFIPKNG KNGAAEGHKV
181 VVKLTSYPEG RMNAEGEVET ILGHKNDPGI DILSVIHKHG LPGEFPADAM EQASSTPDTI
241 DEKDLKDRRD LRDQVIVTID GADAKDLDDA VTVTKLDDGS YKLGVHIADV SHYVTENSPI
301 DKEALERGTS VYLVDRVIPM IPHRLSNGIC SLNPKVDRLT LSCEMTINSQ GQVTEHEIFQ
361 SVIKTTERMT YSDVNKILVD DDEELKQKYE PLVPMFKDME RLAQILRDKR MDRGAVDFDF
421 KEAKVLVDDE GAVKDVVIRE RSVAEKLIEE FMLVANETVA EHFHWMNVPF IYRIHEEPNA
481 EKLQKFLEFV TTFGYVVKGT AGNIHPRALQ SILDAVRDRP EETVISTVML RSMKQAKYDP
541 QSLGHFGLST EFYTHFTSPI RRYPDLIVHR LIRTYLINGK VDEATQEKWA ERLPDIAEHT
601 SSMERRAVDA ERETDDLKKA EYMLDKIGEE FDGMISSVTN FGMFVELPNT IEGLVHVSFM
661 TDDYYRFDEQ HFAMIGERTG NVFRIGDEIT VKVVDVNKDE RNIDFEIVGM KGTPRRPREL
721 DSSRSRKRGK PARKRVQSTN TPVSPAPSEE KGEWFTKPKK KKKKRGFQNA PKQKRKKKK
//