LOCUS CAB11831.1 1177 aa PRT BCT 08-FEB-2018
DEFINITION Bacillus subtilis subsp. subtilis str. 168 transcription-
repair coupling factor protein.
ACCESSION AL009126-55
PROTEIN_ID CAB11831.1
SOURCE Bacillus subtilis subsp. subtilis str. 168
ORGANISM Bacillus subtilis subsp. subtilis str. 168
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
REFERENCE 1 (bases 1 to 4215606)
AUTHORS Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G.,
Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S.,
Borriss R., Boursier L., Brans A., Braun M., Brignell S.C.,
Bron S., Brouillet S., Bruschi C.V., Caldwell B., Capuano V.,
Carter N.M., Choi S.K., Codani J.J., Connerton I.F., Cummings N.J.,
Daniel R.A., Denizot F., Devine K.M., Dusterhoft A., Ehrlich S.D.,
Emmerson P.T., Entian K.D., Errington J., Fabret C., Ferrari E.,
Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A.,
Galleron N., Ghim S.Y., Glaser P., Goffeau A., Golightly E.J.,
Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R.,
Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.F.,
Itaya M., Jones L., Joris B., Karamata D., Kasahara Y.,
Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P.,
Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A.,
Lardinois S., Lauber J., Lazarevic V., Lee S.M., Levine A., Liu H.,
Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P.,
Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M.,
Ogawa K., Ogiwara A., Oudega B., Park S.H., Parro V., Pohl T.M.,
Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P.,
Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M.,
Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T.,
Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J.,
Sekowska A., Seror S.J., Serror P., Shin B.S., Soldo B.,
Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K.,
Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A.,
Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A.,
Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T.,
Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K.,
Yoshida K., Yoshikawa H.F., Zumstein E., Yoshikawa H., Danchin A.
TITLE The complete genome sequence of the gram-positive bacterium
Bacillus subtilis
JOURNAL Nature 390(6657), 249-256(1997).
PUBMED 9384377
REFERENCE 2 (bases 1 to 4215606)
AUTHORS Barbe V., Cruveiller S., Kunst F., Lenoble P., Meurice G.,
Sekowska A., Vallenet D., Wang T., Moszer I., Medigue C.,
Danchin A.
TITLE From a consortium sequence to a unified sequence: the Bacillus
subtilis 168 reference genome a decade later
JOURNAL Microbiology (Reading, Engl.) 155(Pt 6), 1758-1775(2009).
PUBMED 19383706
REFERENCE 3 (bases 1 to 4215606)
AUTHORS Belda E., Sekowska A., Le Fevre F., Mornico D., Morgat A.,
Ouzounis C., Vallenet D., Medigue C., Danchin A.
TITLE An updated metabolic view of the Bacillus subtilis 168 genome
JOURNAL Microbiology (Reading, Engl.) 159(Pt 4), 757-770(2013).
PUBMED 23429746
REFERENCE 4 (bases 1 to 4215606)
AUTHORS Kunst F., Ogasawara N., Yoshikawa H., Danchin A.
JOURNAL Submitted (18-NOV-1997) to the INSDC. I. Moszer, A. Danchin,
Genetique des Genomes Bacteriens, Institut Pasteur, 28 rue du
Docteur Roux, 75724 Paris Cedex 15, FRANCE. E-mail:
moszer@pasteur.fr, antoine.danchin@normalesup.org Phone: +33 (0)1
45 68 84 41, Fax: +33 (0)1 45 68 89 48
REFERENCE 5 (bases 1 to 4215606)
AUTHORS Genoscope - C.E.A.
CONSRTM Institut Pasteur and Genoscope
JOURNAL Submitted (29-JAN-2009) to the INSDC. Genoscope - Centre National
de Sequencage : BP 191 91006 EVRY cedex - FRANCE (E-mail :
seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr)
REFERENCE 6 (bases 1 to 4215606)
AUTHORS Genoscope - C.E.A.
CONSRTM AMAbiotics and Genoscope
JOURNAL Submitted (24-JAN-2013) to the INSDC. A. Danchin, AMAbiotics, Bldg
G1, 2, rue Gaston Cremieux, 91000 EVRY
antoine.danchin@normalesup.org Bldg G1 Genoscope / CEA
(Commissariat a l'energie atomique et aux energies alternatives):
BP 191 91006 EVRY cedex - FRANCE (E-mail: seqref@genoscope.cns.fr -
Web: www.genoscope.cns.fr)
REFERENCE 8
AUTHORS Borriss R., Danchin A., Harwood C.R., Medigue C., Rocha E.P.C.,
Sekowska A., Vallenet D.
TITLE Bacillus subtilis, the model Gram-positive bacterium: 20 years of
annotation refinement
JOURNAL Microb Biotechnol 11(1), 3-17(2018).
PUBMED 29280348
COMMENT On or before Mar 17, 2009 this sequence version replaced
gi:32468687, gi:32468690, gi:32468695, gi:32468704, gi:32468715,
gi:32468723, gi:32468738, gi:32468743, gi:32468745, gi:32468758,
gi:32468767, gi:32468778, gi:32468787, gi:32468796, gi:32468802,
gi:32468809, gi:32468813, gi:32468825, gi:32468830, gi:32468833,
gi:32468840, gi:38680335.
Annotation results relative to BLAST similarities, COG
assignations, enzymatic function prediction (PRIAM software), TMHMM
and SignalP predictions, and synteny conservation (Syntonizer
software) are available in the MicroScope annotation platform
http://www.genoscope.cns.fr/agc/microscope.
The large cluster comprising the i, h and g rDNA regions could not
be properly resolved, we therefore incorporated the original
sequence of rRNAihg in the final assembly.
FEATURES Qualifiers
source /organism="Bacillus subtilis subsp. subtilis str. 168"
/sub_species="subtilis"
/strain="168"
/mol_type="genomic DNA"
/db_xref="taxon:224308"
protein /transl_table=11
/gene="mfd"
/locus_tag="BSU_00550"
/old_locus_tag="BSU00550"
/function="16.6: Maintain"
/function="16.8: Protect"
/note="Evidence 1a: Function from experimental evidences
in the studied strain; PubMedId: 8594198, 9535092,
11065368, 16950921, 22248542, 25713353, 27399782,
27435260; Product type f: factor"
/db_xref="EnsemblGenomes-Gn:BSU00550"
/db_xref="EnsemblGenomes-Tr:CAB11831"
/db_xref="GOA:P37474"
/db_xref="InterPro:IPR001650"
/db_xref="InterPro:IPR003711"
/db_xref="InterPro:IPR004576"
/db_xref="InterPro:IPR005118"
/db_xref="InterPro:IPR011545"
/db_xref="InterPro:IPR014001"
/db_xref="InterPro:IPR027417"
/db_xref="InterPro:IPR036101"
/db_xref="InterPro:IPR037235"
/db_xref="InterPro:IPR041471"
/db_xref="SubtiList:BG10118"
/db_xref="UniProtKB/Swiss-Prot:P37474"
/experiment="publication(s) with functional evidences,
PMID:8594198, 9535092, 11065368, 16950921, 22248542,
25713353, 27399782, 27435260"
BEGIN
1 MDNIQTFIKE SDDFKSIING LHEGLKEQLL AGLSGSARSV FTSALANETN KPIFLITHNL
61 YQAQKVTDDL TSLLEDRSVL LYPVNELISS EIAVASPELR AQRLDVINRL TNGEAPIVVA
121 PVAAIRRMLP PVEVWKSSQM LIQVGHDIEP DQLASRLVEV GYERSDMVSA PGEFSIRGGI
181 IDIYPLTSEN PVRIELFDTE VDSIRSFNSD DQRSIETLTS INIGPAKELI IRPEEKARAM
241 EKIDSGLAAS LKKLKADKQK EILHANISHD KERLSEGQTD QELVKYLSYF YEKPASLLDY
301 TPDNTLLILD EVSRIHEMEE QLQKEEAEFI TNLLEEGKIL HDIRLSFSFQ KIVAEQKRPL
361 LYYSLFLRHV HHTSPQNIVN VSGRQMQSFH GQMNVLAGEM ERFKKSNFTV VFLGANKERT
421 QKLSSVLADY DIEAAMTDSK KALVQGQVYI MEGELQSGFE LPLMKLAVIT EEELFKNRVK
481 KKPRKQKLTN AERIKSYSEL QIGDYVVHIN HGIGKYLGIE TLEINGIHKD YLNIHYQGSD
541 KLYVPVEQID QVQKYVGSEG KEPKLYKLGG SEWKRVKKKV ETSVQDIADD LIKLYAEREA
601 SKGYAFSPDH EMQREFESAF PYQETEDQLR SIHEIKKDME RERPMDRLLC GDVGYGKTEV
661 AIRAAFKAIG DGKQVALLVP TTILAQQHYE TIKERFQDYP INIGLLSRFR TRKEANETIK
721 GLKNGTVDIV IGTHRLLSKD VVYKDLGLLI IDEEQRFGVT HKEKIKQIKA NVDVLTLTAT
781 PIPRTLHMSM LGVRDLSVIE TPPENRFPVQ TYVVEYNGAL VREAIERELA RGGQVYFLYN
841 RVEDIERKAD EISMLVPDAK VAYAHGKMTE NELETVMLSF LEGESDVLVS TTIIETGVDI
901 PNVNTLIVFD ADKMGLSQLY QLRGRVGRSN RVAYAYFTYR RDKVLTEVAE KRLQAIKEFT
961 ELGSGFKIAM RDLTIRGAGN LLGAQQHGFI DSVGFDLYSQ MLKEAIEERK GDTAKTEQFE
1021 TEIDVELDAY IPETYIQDGK QKIDMYKRFR SVATIEEKNE LQDEMIDRFG NYPKEVEYLF
1081 TVAEMKVYAR QERVELIKQD KDAVRLTISE EASAEIDGQK LFELGNQYGR QIGLGMEGKK
1141 LKISIQTKGR SADEWLDTVL GMLKGLKDVK KQTISST
//