LOCUS CAB10024.2 1091 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans FERM domain-containing protein protein.
ACCESSION BX284606-2779
PROTEIN_ID CAB10024.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="frm-3"
/locus_tag="CELE_H05G16.1"
/standard_name="H05G16.1a"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00001490"
/db_xref="EnsemblGenomes-Tr:H05G16.1"
/db_xref="GOA:O17905"
/db_xref="InterPro:IPR000299"
/db_xref="InterPro:IPR000798"
/db_xref="InterPro:IPR011993"
/db_xref="InterPro:IPR014352"
/db_xref="InterPro:IPR014847"
/db_xref="InterPro:IPR018979"
/db_xref="InterPro:IPR018980"
/db_xref="InterPro:IPR019747"
/db_xref="InterPro:IPR019748"
/db_xref="InterPro:IPR019749"
/db_xref="InterPro:IPR029071"
/db_xref="InterPro:IPR035963"
/db_xref="InterPro:IPR041788"
/db_xref="UniProtKB/TrEMBL:O17905"
/db_xref="WormBase:WBGene00001490"
intron_pos 43:0 (1/8)
intron_pos 78:0 (2/8)
intron_pos 119:2 (3/8)
intron_pos 152:0 (4/8)
intron_pos 193:2 (5/8)
intron_pos 275:0 (6/8)
intron_pos 328:2 (7/8)
intron_pos 353:2 (8/8)
BEGIN
1 MSNIPRGVGA PPPPGMNSSK RGRLVCIKVR MLDDTVAVFH LGHKAIGQTL LDEVCRHLNL
61 LECDYFGLSF IDINGNHCWL DREKTILRQI TNGSTDAKFY FVVKFYTPNP IDLEEEYTRY
121 LFTMQIKRDL ALGELHCSDN TASLLSAYLV QSECGDFSSE DYPDATYLSH TRFVPNQTLE
181 FQKKVMDNHR NFIGMTPGES DLAMLEVARR CDFYGVKLHA AKDIDGNDAA LSVMHLGIKV
241 FRQLQLDTTF SWARIRKLSF KRKKLLVKLH PDSYQYLKET VEFSFETRDE CKNFWKKCVE
301 HHAFFRCVQA EEPKKETRFF ISKGSSFRYH GRTQKQLIDY VREHHKRREP FTRPLRSAAS
361 TRKGTYSSTY GLVTDRPTKH RNGSVYEPNQ TDPYNKHQNT HSSMPHIAHI SSQPADHSFS
421 GTLDARVGKS VTRDPSTSVT QHRLRQLKRS ERCISDVDTV ERPQRSSCRP VSHAINISST
481 SSKEQPDLSV SLPNVLSDDL QMVCKEIEIE QNDPPKSVSG DNFQQRRSSR DYDNVSEDSY
541 RLSDHERSTR SEVGVGSKFA AATIFNSTFV ARKPGSNVVK RVVAHTKSTP NSTDDEEGAL
601 KSASEYQTFR HIKEYPFARN ANIVPIEIDG PNVDLSARRS PAATTTTTRT YANTTTTVTT
661 TSKVLTSSGA VLMKPKVISN DHEPSSGTHS SRVSPESGTY GALGPLPGRV ITKENMMITP
721 EGFKEKKAKP NPPPKPSFPV QAVHSETEVV REIKTERASS HPLVHMQEEI PFSRAPLKFE
781 DKKERKSSLS RPALISVQSE DNPDVQKCHL FNSDIPYTLT MRNVENTQSL PYSSFKDVST
841 AKKQGYESNS LKRVSKSPEF KRRKSLDLVP RKRLPSPGNF SAQDHTISPT TPDSDVLEYL
901 LRRRSLLGDK SVIKTKSKRT DPRRQTQPVR FDLPPSPCSP TAGGSTPFIS ILNDDLFDEC
961 VSESRSLHED MDRLDKTTPH NQSISSFMSQ KSRRDSEDSD VMPPPPEEIL NKAMISSSRP
1021 APPPPPPKSL AAAVKVAEMK AAAAGKIYYS GSSRTGKITD SPPFIDDSPK NSSASDAPSV
1081 PSPQKNCFSD F
//