LOCUS CAB07551.2 1584 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans DUF38 domain-containing protein protein. ACCESSION BX284602-4693 PROTEIN_ID CAB07551.2 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279421) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="II" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="C01B9.1" /locus_tag="CELE_C01B9.1" /standard_name="C01B9.1a" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00007220" /db_xref="EnsemblGenomes-Tr:C01B9.1a" /db_xref="InterPro:IPR002900" /db_xref="UniProtKB/TrEMBL:O45231" /db_xref="WormBase:WBGene00007220" intron_pos 152:0 (1/11) intron_pos 243:2 (2/11) intron_pos 479:0 (3/11) intron_pos 569:2 (4/11) intron_pos 796:0 (5/11) intron_pos 880:0 (6/11) intron_pos 895:2 (7/11) intron_pos 1126:0 (8/11) intron_pos 1211:0 (9/11) intron_pos 1253:2 (10/11) intron_pos 1498:0 (11/11) BEGIN 1 MKYVNAILAI EIPISYISIQ FVNRECWKSL NPEVVSHVGM LLLEEMAKML KSSNVKLKKF 61 SVRLFETPSD PIEKILSDLD VKVLVLKTDW DEDDEDKKPI QKVESDNWKK VRALYINSFY 121 LAGPVQQISH LSTASCFFNS INFDDLVFLK NHFLDAPHAR EYVIHYREFD GHPMMVLPQK 181 MGLITIVGDP IDVDHCETGE DIYKFHVMDE NHDISINLCM REYANLHSIT FTREPPLVKQ 241 FSDPIVTNYH SSTVELLENS QNISVFLVIL RDSIMFQLTY QPKTSLEKQN AIFDYKKQMS 301 GCSVNSENRT ELGVNLDYRT LFCTHLKYLL DRIGYCTFAA FSFVFYGKLM SEYVVGDESD 361 MLHMEFFNVF DKFVQPNSIK ALVFSVNFKF HPLAINYITS VLSFFQPGPL QSIMLDMDKR 421 TTAMNLESIV RLEQWEQAAM ILMSDITVKF ARRDFGHLGI AKIIAHPISF EDLTFLKEHF 481 ITSDIPQMFE IKYLRSSEIN VNVAQKLLET FGPPAHEEYA SAEQCDRIWC LPISNSENCV 541 LVKHIFCRRR EYGSFNFSRR LASELELMST TSPNRSQILS ALVKKIEALK NWSLKVRIDE 601 GQVQINFTHS PWPTKSICYK NHREGCLLEY EFHKVVFDEN FAVASCDDLN FVMNSVQEFD 661 KFEIESGEIS APNRDDDPNN SNETILPYWL TNLKTHLKQR SQMLTVGTFK LNLKNHAPNN 721 RFFSILSLIA SETIELKTTV QEAKLKLKEI NVTNAKEFKA ESFQLSVPIK LLLHFSNVSA 781 TLQTVSIQDL NILKEHFLNS PIKLKFIIND TLSKNEDVNV TNLLEMFGAP DRIEDVLMEW 841 RIRTLSTKFE LVIEYRPCVP MGQSFTFESF AIADTVFEKE HQTLGPINNL AMLPLSFTTR 901 SVILPSTLNS MKGAQLTEIY MSVERIRITI FFRYFLHNHE NCRTHEYERY QKGCRVKCDL 961 QEEVARHQDF ISLAISHLSV ILKSHDNMVR FKIYLRDDSE EDDVDKKVLQ ALVEALKERQ 1021 NKLRIKYLEV YFWKRPLIEL AASLLSWCDP IDLIRIVLEA PFFKGIVIEP EACELLVNLE 1081 QWKSVRQMMC PSLVFPTALS SFEHFSAANF TVPTISLEQL NSLKKHFMNF TTEFIFAIHF 1141 LAYKDQDINN MGERGPKPQD VFCTPSQAEY GNEELGNKRW YLPMENTEYQ LDIIYLRCGR 1201 QGVPVYIFKR EPLIKLHPLR KAEKAPPFDM LRLVTWFPLI MKNILNDCAF VSVEVLRNVS 1261 KDIRQFVDRN RRNSIFQTYD ISLSLSSDDA KLCIRQFNSH TIFHYSPQPI GCKLKITELT 1321 QFGRFQSMRQ LNMTDDTYIN YLMRILQYIL RDQRDCLNFF TYGLHFENDN EAAEARRQVK 1381 KILLPNALRS HKFQLVNLDL TVRNESEILE LLECFDAGKL KCLILEFARK KEEETGGTIE 1441 INRIAEMDHW RNLEEFAVVD YVINADPLNF NQLFGHFKTL NVCLQNFTVD NLLFMKQKSL 1501 ASSLYLHFIC ENFELENLYE LIGRPLLETA NAVKYRKWFF KLIGSIENTL ILIIHTQNGK 1561 IHIQITRIPT SDVPQNATIR VDFE //