LOCUS CAB07529.3 1218 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans NLPC_P60 domain-containing protein protein.
ACCESSION BX284606-3645
PROTEIN_ID CAB07529.3
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="H03A11.2"
/locus_tag="CELE_H03A11.2"
/standard_name="H03A11.2"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00010357"
/db_xref="EnsemblGenomes-Tr:H03A11.2"
/db_xref="GOA:G5EFE3"
/db_xref="InterPro:IPR033336"
/db_xref="UniProtKB/TrEMBL:G5EFE3"
/db_xref="WormBase:WBGene00010357"
intron_pos 15:2 (1/7)
intron_pos 46:0 (2/7)
intron_pos 96:1 (3/7)
intron_pos 118:0 (4/7)
intron_pos 201:0 (5/7)
intron_pos 1122:1 (6/7)
intron_pos 1158:0 (7/7)
BEGIN
1 MSHGAKCICQ ICTCGRHKCP HDRNASSFQL GDGKTGLSQE KSITQTSFES SSYHQKSQRT
61 TPTRHYSTIS SLFTEENNTG TGGTQTRNIK SSEYRAKTQN GEQSVAETRS TQRETVQLPP
121 ILKADNGRAT SQSGRERNSR SSIQQALRQH SEERANSAES KRQSTLTGAK KTVSINEQIT
181 GYQKTHRNSS QVFEARRLHQ IAELKDNSNS GTSIDNAKVQ TRAEKNGTNN QQHKLIEVNV
241 NRNYSPRNNS QINELFKESG ADRATSSKNT SNKTPQDNIN SPKYSKKQAV KAHDRHSATH
301 REIHGKQNMA HTTQNQEDFI YRKAEHTQIR HPSDHHILYS QQSRTSTNKT DQQSKTQNQE
361 DYTHISGERY AKKVPSDNKI LQGAGQQFEA RTQNQEDFTH ISGERYAQKV PSDNKILQGD
421 GQHFEAKTQN QEDFTHISGE RYAKKVPSDN KILQGDGQQF EARTQNQEDF THISGERYAK
481 KVPSDNKILQ GDGQQFEART QNQEDFTHIS GERYAKKVPS DNKILQGDGQ QFEARTQNQE
541 DFTHISGERY AKKVPSDNKI LQGDGQHFEA KTQNQEDFTH ISGERYAKKV PSDNKILQGD
601 GQHFEARTQN QEDFTHISGE RYAKKVPSDN KILQGDGQHF EARTQNQEDF THISGERYAK
661 KVPSDNKILQ GDGQQFEART QNQEDFTHIS GERYAKKVPS DNKILQGDGQ QFEARTQNQE
721 DFTHISGERY AKKVPSDNKI LQGDGQHFEA RTQNQEDFTH ISGERYAKKV PSDNKILQGD
781 GQQFEARTQN QEDFTHISGE RYAKKVPSDN KILQGDGQQF EARTQNQEDF THISGERYAK
841 KVPSDNKILQ GDGQQFEART QNQEDFTHIS GERYAKKVPS DNKILQGDGQ QFEARTQNQE
901 DFTHISGERY AKKVPSDNKI LQGDGQQFEA RTQNQEDFTH ISGERYAKKV PSDNKILQGD
961 GQQFEARTQN QEDFTHISGE RYAKKVPSDN KILQGDGQHF EAKTQNQEDF THISGERYAK
1021 KVPSDNKILQ GDGQHFEAKT QNQEDFIHRR NERVIRSVPI QHKILSSEGR KFDAKTVHQE
1081 EFVDLTSDIV AQSGIILKAK RDSSSVAQSR SHIYETSNFM EESESGFEGY SISSGSRLTT
1141 SHHAGYLTQN AGSSYDIDYQ YRPVPCIAGE LLESVKRNHA NTEHYNYNAC DSGHHFYKEK
1201 AILEEEETQE SESSVIKK
//