LOCUS CAB07402.3 502 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Neurotransmitter-gated ion-channel ligand-binding domain-containing protein protein. ACCESSION BX284606-3390 PROTEIN_ID CAB07402.3 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="lgc-25" /locus_tag="CELE_R03E1.3" /standard_name="R03E1.3" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00010994" /db_xref="EnsemblGenomes-Tr:R03E1.3" /db_xref="GOA:Q9XTY8" /db_xref="InterPro:IPR006201" /db_xref="InterPro:IPR006202" /db_xref="InterPro:IPR036734" /db_xref="UniProtKB/TrEMBL:Q9XTY8" /db_xref="WormBase:WBGene00010994" intron_pos 10:1 (1/8) intron_pos 67:0 (2/8) intron_pos 117:2 (3/8) intron_pos 165:0 (4/8) intron_pos 213:1 (5/8) intron_pos 269:0 (6/8) intron_pos 320:1 (7/8) intron_pos 383:2 (8/8) BEGIN 1 MTLTQLLLIG ILVIWHLDNQ VCGLSKEQQL EKQLMVKYNY KVRPVKSEAT VTQVNVFLSI 61 AHVEKVDEHE QTALVHGHIW ATWIDEYMQW DAKKENVTKL TISAHSLWQP ALALYNSARG 121 NSWHLYMGAM PATVYSTGKV WSTGTFSFYV TCQFDFTNWP FDQQSCPIVI ADWVYNLNQV 181 NLSDPYILKE YGKPSIRLSY DPIEKSDKRH VAGWEVMDAW KKHCYWGPKG CKEEQPEGEA 241 EWYWSLLEFG IILRRHLPYF SLSILFPMAG TSLILLLCFW IETHSICFFT IMLNIILQSY 301 YGSSLLAKMP PGSGRTPKIV HLYNMNLLLS AVQFVLIVFS EFLRLRLPKK FELDLGFDII 361 GVPQRFGVDK LFTQKGLSFD PQELFSNVYS TRTLEEILEQ GGGSSSTSVG IGNPLHEDIT 421 SFQKSSDSSV LIDIPMTSEP QSFSASTSEL LSSEPSSNEE TQISEEPEEE RILDVQLRHI 481 KRYVFCLVIF IHIIAFLLVL FT //