LOCUS CAB03946.1 1181 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans USP domain-containing protein protein.
ACCESSION BX284606-2671
PROTEIN_ID CAB03946.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="C34F6.9"
/locus_tag="CELE_C34F6.9"
/standard_name="C34F6.9"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00007943"
/db_xref="EnsemblGenomes-Tr:C34F6.9"
/db_xref="GOA:O17646"
/db_xref="InterPro:IPR018200"
/db_xref="InterPro:IPR028881"
/db_xref="InterPro:IPR028889"
/db_xref="InterPro:IPR038765"
/db_xref="UniProtKB/TrEMBL:O17646"
/db_xref="WormBase:WBGene00007943"
intron_pos 121:1 (1/11)
intron_pos 242:1 (2/11)
intron_pos 627:1 (3/11)
intron_pos 655:1 (4/11)
intron_pos 724:1 (5/11)
intron_pos 758:0 (6/11)
intron_pos 838:0 (7/11)
intron_pos 939:1 (8/11)
intron_pos 986:1 (9/11)
intron_pos 1036:2 (10/11)
intron_pos 1130:0 (11/11)
BEGIN
1 MEGADPTQTV GEVLKRLHQK HLDGVSLTTL QRDDIHSIFP AVHVQHSIGQ TSYDYQMTES
61 YFTSRLSEVL TETHNLKAEE ASKIVNGQYT KATPSSQFLS SIPSSMQEFV GKIGLPDPKT
121 NAPAFYIDNL LANQLKSLKG IITKDSFNSE KSLASFSYAD SFFLKMKGVH NNNEVASPDE
181 KVQEKSSVSP VIPNEAVVSK MNEYLDETGS AKNLEAHVKP VSDPPASPGR VISSKMLSSR
241 SNDENKLLEN AVETLPTVLP QTDYAENEKF LNDIQVETNN SISDHTRQPS NEPVEKVSES
301 AHDLTSQISQ CTDLLKDHPE SSETTSNTSA GVASATTDQT PPDVVADQKY NVTTPIDPSH
361 IVLTSPHSEF DKKEESSEQI HNNNMENDAL HNSTFPKQND VVMLELFKAS EISEVPLSIL
421 VVVPISEPSS VSTTDVSTTL DDALQDLPIS QVVESSQNPV EEKTMSSETA VSLNLPCVNT
481 LITEADEVKL RDALWEKRKR EQEKLHNKTI IWSRTVTYPP IHTFPKTKKY VKQAAKIPQP
541 AVLKEDPQAV KPRPPKKDVL AGYSVETIFL ALTGETVLCR SHSLEDLVRL KQEELDAVTS
601 ILNNGVQKSQ CDSGVMSNTL KSQDRKESEG VQLNSPLPEN HAVNQTVNQS MIRKGRPKRS
661 TKTKSGSETE NESMSEDNDD FSEHDEDFDI EQAVQAIDNV HHKAKRERKS RSSITVSEDG
721 YPPETVSPQE LHSLKRKSLP DDNTTPSKQR RSSRLKNSTA KTADFVYEPA VTDRSEQDKS
781 PSLPREKNIG KDSGKSRLAS QRSSSRRSSA PFSEESPSTK KTRFSTRVEQ YSRRVSNETI
841 KSLLQQVLTP KAADECDIQD HFPSPIVRRA IVNRNTLCYA ISMVQLLMRV PQVYSIVRSH
901 SHKKQKANRS ECFLCMLTNL ISERPRADDT PAFVALLKSN WKNIEDEGMQ CVMEAMQYFF
961 NKFDEEYMHA HPPIRSYFEI EMFIAYECKS CKHVSNAPDK AIYVSIDLSS KTKGTMQSMV
1021 DKMANPIPVV GMNCKSCGQE TLCSTTRFTK LPEVLLYFVP RVKDQQRGKD MTVLNVQRQL
1081 ILKDDNNAHN YELCSFIAHC GKNGDNGHYK SFEVDRTNEF QYNEYDDAKV VLDSKLSSDI
1141 TIVLAMFRKQ EAVAKDAATD IIFDGRGNIV FANEKHCQSI Q
//