LOCUS CAB03861.1 1642 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans EGF-like domain-containing protein protein.
ACCESSION BX284602-4954
PROTEIN_ID CAB03861.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="C09F9.2"
/locus_tag="CELE_C09F9.2"
/standard_name="C09F9.2"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00007479"
/db_xref="EnsemblGenomes-Tr:C09F9.2"
/db_xref="GOA:O62055"
/db_xref="InterPro:IPR000082"
/db_xref="InterPro:IPR000742"
/db_xref="InterPro:IPR002919"
/db_xref="InterPro:IPR005018"
/db_xref="InterPro:IPR013032"
/db_xref="InterPro:IPR013111"
/db_xref="InterPro:IPR036084"
/db_xref="InterPro:IPR036364"
/db_xref="UniProtKB/TrEMBL:O62055"
/db_xref="WormBase:WBGene00007479"
intron_pos 76:0 (1/7)
intron_pos 103:2 (2/7)
intron_pos 220:1 (3/7)
intron_pos 552:1 (4/7)
intron_pos 1501:0 (5/7)
intron_pos 1517:1 (6/7)
intron_pos 1579:0 (7/7)
BEGIN
1 MLIRAVLALL LATLATAHIK LVYPPARAPA LDFYSSSNSQ PPCGVKKPAP GEGVRTFMKA
61 GSTVEMNWFV AVPHMGGIRL EVLNSSDEPI AIFTNFNDAF NVTETTKKVE LPPNFECKDC
121 AIRMTTQATE YGNSYFFYSC ADINIVNVIP DGDTCVGNGN RMNGVCQCFD GFYGSECQFQ
181 DECKEDDDCG VQGYCRLGGD TPRRQCFCPT SRYGKTCELE SDSIRSVSDF DETLYQKRED
241 QGNKIYWRLL KDEIEFVLRY PGQSWIAVGW KSPEATCDLS AGDFAGRNVA TTSSSPSSTI
301 SSIITNATSR EQNDAGDQEC GPNEQWSECP ESSRECEHSC DWTHFPETTP NCPNSCGTPR
361 CICKEGFVRM ANDEDVCVPF DFCDKTVENE ETCEANSTWA KCGTACEPTC ANMYDTAPCP
421 ASCEKPGCTC ADNYVRHNGK CIYWGDCPEL KDEKVTTKKH EVVETTQSTI DRNEITQPSE
481 ASKGTTQKVI VTECSLNETL NECGRVCEAD CFSIFTRSEC TDCGSAACAC LQGYARNPQG
541 QCVYWGDCPT DVQPTTLKST APTTPVPTQT APPSVNGDVC YGDFRYPAGC SDCEYKLSWN
601 YMEETDEIEF SLETRVNDNS WTGVGFSKDG TMVDADMIIV TTRNGKIQLN DMQSRGYDQP
661 AMDAVQNVKS STDVIGTYSN GVLRAQFVRK VNTGDDTDKQ FDGDSCWKML YPIAGGKLDQ
721 YGNVSIHLST PLSSDKPVCI RSCTGGKKAT TSSASSAPAS YTCTNEYRFP EGCADKDCDY
781 VAKWNVDSAK KDVRFEITAK TPGRWTGIGF SRDGQMTNAD MYTGWFFDGK AYIVDRFAYG
841 RQLPAIDPAD RQDIYDMGGK VEDDLQTIWF RRKLISKDTK TDVSLDECHY FLFPVGGGRV
901 LARKSSDFTN PKTPIGYHDQ VQPQVSATKI CLCDETGKTV SHETKAPISR RVRRAATRVA
961 TSAMHCADMV VGMVSNGRAR IMDMYSPSKA TPMEDTFFGG ENSLTSAAAF QEDGVTTLIF
1021 RKKLQAEEKW DNSFVNGPMT VIWAKGADPM NYVHTTGGAP IKAAPEFFEN AMKYHGKNAR
1081 GVMTVNFFEE VETSVESRPQ PPTVHGMHLE DTCEGSIRHP EGCTGEQCIY TISWISDGSV
1141 ARFTIHGALQ TSQWTALGFS TDGNMAAADA VVIGIQNNAV MVTDQFMPNY GRPVVDEQQD
1201 IFDVETTYVN GYLTANFSRE LHSEDEFDVD LQECVFLLYS PFGGVIEKNG EIRKHETTPL
1261 KSKSKICLNK CTEQKVMEAT TTTDAPEEVT AETSTTTTTD VKPVPTSTKK TISSSGTTTK
1321 VLMPPMHTKH SYTVYEPEVS AKRRYGLRVR ILNREFNEAL NDPKTGYYQD FTKEVTQSID
1381 ELLAKRWKGM RVSKIVGYEK GSVIAEFEVV AMEDTAKPME LKSMVEENAV RGQIGAFSIE
1441 PSTVKVTEVD TTTAPSNEET LTDWRMWRNI VVIAGCSVAT AIAVLCICYM CCSKCKKRTY
1501 TAYPVADHHM SYASRMLNEK GGFDNAIYHQ PQRFYSQTTV ASTKVTSASA AHGADPNGNI
1561 EGPPGGVGET TYAEWYSKVG SKPASQQHEE VPPQQQQPPV QSRPPSTTPY VSYPNDPTGY
1621 YTLGGRHRQN SASSNNKYAT KY
//