LOCUS CAB01868.3 996 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans Chorein N-terminal domain-containing protein protein. ACCESSION BX284606-3497 PROTEIN_ID CAB01868.3 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="C44H4.4" /locus_tag="CELE_C44H4.4" /standard_name="C44H4.4" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00008094" /db_xref="EnsemblGenomes-Tr:C44H4.4" /db_xref="InterPro:IPR026728" /db_xref="InterPro:IPR026854" /db_xref="UniProtKB/TrEMBL:G5EE16" /db_xref="WormBase:WBGene00008094" intron_pos 15:2 (1/18) intron_pos 51:0 (2/18) intron_pos 83:0 (3/18) intron_pos 107:2 (4/18) intron_pos 147:0 (5/18) intron_pos 184:0 (6/18) intron_pos 229:1 (7/18) intron_pos 335:1 (8/18) intron_pos 401:1 (9/18) intron_pos 515:0 (10/18) intron_pos 541:0 (11/18) intron_pos 630:0 (12/18) intron_pos 665:0 (13/18) intron_pos 739:1 (14/18) intron_pos 788:1 (15/18) intron_pos 846:0 (16/18) intron_pos 875:2 (17/18) intron_pos 929:0 (18/18) BEGIN 1 MTSIIKNQLV KHLSKFTKNL KPEQISLDVL KGNSKLQFIE INEDVLTEIL ELPSWLKIKR 61 AFCTGVAVNV PWTKLKTCPI QIFIDEINVD VELTNEHKKQ AKSNPLGNLG DSSSYGFMNK 121 IIENMSLYIS SVEINFDSDV FGGSFMLQRL SVESRSPGWA QVKDLRQTRI TCSETNRTLM 181 FKQLSWHLLR IEASAKTSKN EQRSKINAPL RLITSGGKIR IALKKNVNDG SVIHARIQTI 241 LDDILWVATL PQLRSAISFA SYIAKLVKES QKNDVITTSS GNDNPFMKAA GNSATADAST 301 ISSAYNIFYF DQTSYHLHVK KIDLHLCDDA HTASDYPPDW DIESGAMQVT LYQVLIDVYP 361 KAHAQSDRST WMRYSNTNPI AAWFRNHLSE QFLTLLGNAE GQTTRTRLER CWPQLIGFFV 421 VLRVHDLTIQ CVSDMNTKKD ALTNLFESER HLHSLPSDQQ IVHVEFGAFY HPHSDKLPVP 481 NSAVYFQLGP FTISFDERTM RWCCYVAHAL SSAIEDGNLI PENELDIQPP TIKVNLVMPR 541 LVLNLPGPFT DFNFPRRLVT SMSTLSISSS QIDFKENSRF RILSESTDEH SDVKNQLING 601 LNKFHICTSP VWIEIDHGPQ TKGFPFLHDV SFNGILAIDK DKVNVLVEPA EDVAVVVDHY 661 QFLQLTRLGD KFTKFLDQLT LDMKHYNTNK PKSDVTVDFL ASIARIRLYI VLTMGEIASP 721 YDSAAMSNFN HSFMDRLSDI ASTKSITNAH SFSNVNEIKV INEQPRRTNK TATPEEFPEF 781 PRGGIDNDTS EVASIATSIE DEAIYDLSEM PSDDPFGIPE YADEAITIDE PAINDRTFRH 841 TMAKQANLFM VTLEDLKLAG NVVEETLKID GQLKNIQLSE KLGIVRSEIN DMMKKTGSEP 901 LDLSKLPPTY AAAFSFLAPA NEKVSHVTVD VNQLKATIDD EIIAHLGAFA KDDVITENRL 961 RLAVLVHDSC IQIVDKKKKK PLRMKIQAMT IEQDED //