LOCUS CAB01860.2 611 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans ANK repeat-containing protein nipk- 1 protein. ACCESSION BX284606-3672 PROTEIN_ID CAB01860.2 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="nfki-1" /locus_tag="CELE_C33A11.1" /standard_name="C33A11.1" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00007877" /db_xref="EnsemblGenomes-Tr:C33A11.1.1" /db_xref="EnsemblGenomes-Tr:C33A11.1.2" /db_xref="GOA:G5EDE9" /db_xref="InterPro:IPR002110" /db_xref="InterPro:IPR020683" /db_xref="InterPro:IPR028320" /db_xref="InterPro:IPR036770" /db_xref="UniProtKB/Swiss-Prot:G5EDE9" /db_xref="WormBase:WBGene00007877" intron_pos 46:0 (1/11) intron_pos 97:0 (2/11) intron_pos 170:1 (3/11) intron_pos 210:2 (4/11) intron_pos 252:1 (5/11) intron_pos 318:2 (6/11) intron_pos 365:0 (7/11) intron_pos 433:0 (8/11) intron_pos 471:0 (9/11) intron_pos 529:0 (10/11) intron_pos 551:0 (11/11) BEGIN 1 MATVAPKGNC LVARAIPSDS HADQLTDLLC KLSVNGDANQ KSVNKFESQH GVTPSDFRDI 61 QNIRSSALAK KTKTSKFQLD GVTLFADLTP NSKSKKKTEN QETKEKDEEA EEKKDGPPKD 121 DKELKMKKEK EQEDENAELD EQKKDGDLLG RGPVHNVRVA TGGSHPYHRA QIPYGCAAQT 181 PITDISAYTG YGSGYECGST WSLSPDTTIG SISASTTPDT VLSSDGYGSA SPPQHSPKES 241 LQSPFSDISS ADTSRVLTPE NNELPESLQD FILQYSNQYT KEESIRGRPP SADSGVSSPM 301 SARSAPYASP HVPQGTCSGP TTPSFNQTRL SPRTSENGIT AKQRLNAIIP ESDLATGFHW 361 ACTTWKNVLT NRDADGDTPL HIVAAHNDLG KIYALCETLR KTMNENDDNV FNVSNNFGET 421 PLYVAVLQRS IEVVEYLLEL GASPNSRSSR AVGDSPLHFA TARGMNNMVE ALLSKREIRV 481 NETNDDGQTS LLCAVKMHGM MDEQTQHKID NKSIIEMLIK AGADPTIAET STGKTIVHHA 541 VDKMDVELLD FLKTVVNEDT FTELANLSDF HGDTAVDLLC SSTQNEDTNN VRENLYIRLL 601 TSGAVPNKSR A //