LOCUS CAB01744.2 641 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans TBC1 domain family member 23 protein. ACCESSION BX284606-3585 PROTEIN_ID CAB01744.2 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 17718942) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 17718942) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="X" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="tbc-1" /locus_tag="CELE_F20D1.2" /standard_name="F20D1.2" /note="Confirmed by transcript evidence" /db_xref="EnsemblGenomes-Gn:WBGene00008974" /db_xref="EnsemblGenomes-Tr:F20D1.2" /db_xref="GOA:Q93534" /db_xref="InterPro:IPR000195" /db_xref="InterPro:IPR001763" /db_xref="InterPro:IPR035969" /db_xref="InterPro:IPR036873" /db_xref="InterPro:IPR039755" /db_xref="UniProtKB/TrEMBL:Q93534" /db_xref="WormBase:WBGene00008974" intron_pos 19:2 (1/12) intron_pos 45:0 (2/12) intron_pos 115:0 (3/12) intron_pos 167:2 (4/12) intron_pos 209:0 (5/12) intron_pos 237:2 (6/12) intron_pos 315:0 (7/12) intron_pos 349:0 (8/12) intron_pos 414:1 (9/12) intron_pos 449:0 (10/12) intron_pos 527:0 (11/12) intron_pos 615:2 (12/12) BEGIN 1 MGETGPTNNT SFSSLDDNWE TDVNVLSSEL GDLDTEGNDK SDWMRLLGVS MKPNPLDDWD 61 QLYNLNNQCA LRNDCRKLAN GLKNKRSVPE LESFLTLYCK KRGMDYIKDI GWLTILEKIL 121 LLNVPAAHEF NVFFAFTTKY IPKDTRPDAQ IFDLFRLLLQ YHDPQISNHL ESLHCSPSMY 181 TKNWFATLFS SSMSTESCHE LWKLYIEQGD PFLVFHLAIV FLINAKDEIL QVKRDEKEKA 241 VQILENMAAQ LSVEDVPDFF QLALHYSDKT PECIRKDFHY IIFGANFDEE VKEIQMNKML 301 CLPIPAIDLT SHDEISSGSV NFFIVDTRSN TDFDSGHFVS SFNLDCVAIV DEPEKFEIAL 361 NSLECYKTSR RDEDHYLILG YGSDEEDNYM NMLIAMFIQK GKLHVSFVQG GYKKLHDCIG 421 QHNRWELIAM HSEDRCELCS SEKASPKWGF FSKMKSAVSN TSSRMKERVE AVVFPIGEEK 481 KLDDKHADSK QRHGKRYRQQ SVFTIDENSD DEMAAGAAVD ENPKEEILLS KEFTETFECQ 541 EVFRDGSING HIALTRTHIY VLHDVPGKQG YVTTEARHAL STVVAVTSRR SVPEMLTFKL 601 GYEMNGSSKI TAVHKLYVPK AGECAKAVKL AIYALRPLPD A //