LOCUS CAB01733.4 1333 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans TBC1 domain family member 2B protein.
ACCESSION BX284606-3363
PROTEIN_ID CAB01733.4
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="tbc-19"
/locus_tag="CELE_C31E10.8"
/standard_name="C31E10.8"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00007849"
/db_xref="EnsemblGenomes-Tr:C31E10.8"
/db_xref="GOA:G5EEB5"
/db_xref="InterPro:IPR000195"
/db_xref="InterPro:IPR001849"
/db_xref="InterPro:IPR011047"
/db_xref="InterPro:IPR011993"
/db_xref="InterPro:IPR015943"
/db_xref="InterPro:IPR035969"
/db_xref="UniProtKB/TrEMBL:G5EEB5"
/db_xref="WormBase:WBGene00007849"
intron_pos 26:1 (1/29)
intron_pos 86:2 (2/29)
intron_pos 137:0 (3/29)
intron_pos 154:1 (4/29)
intron_pos 176:0 (5/29)
intron_pos 225:2 (6/29)
intron_pos 263:2 (7/29)
intron_pos 307:2 (8/29)
intron_pos 357:0 (9/29)
intron_pos 442:0 (10/29)
intron_pos 496:0 (11/29)
intron_pos 526:0 (12/29)
intron_pos 638:0 (13/29)
intron_pos 698:0 (14/29)
intron_pos 738:0 (15/29)
intron_pos 763:1 (16/29)
intron_pos 794:0 (17/29)
intron_pos 829:2 (18/29)
intron_pos 935:0 (19/29)
intron_pos 976:2 (20/29)
intron_pos 1028:2 (21/29)
intron_pos 1088:1 (22/29)
intron_pos 1106:2 (23/29)
intron_pos 1164:2 (24/29)
intron_pos 1204:1 (25/29)
intron_pos 1229:1 (26/29)
intron_pos 1244:2 (27/29)
intron_pos 1270:2 (28/29)
intron_pos 1297:0 (29/29)
BEGIN
1 MTSKTTEIQH AYSIAGFLHM KYLGGALALW RPRRRFYFAI DEITEELVYY KTEGEFTSHR
61 EPVGSFPISN SVITLDENNH LIFILHVSGR SIEFEADNEE SCRAWLHTFC NRYSEAERTK
121 YQMMTHRKIK KASSLPDQES TTAATDQHIP FRKHSVPAQN LVTTRNFIMP PPDIAEGYLP
181 DEEMDDWVTQ WLTNEKFHNF PSCTDMTTPT STNQSKVDTC SESERAESEE LDLLREITNN
241 QKKKIEDMKH EMNAMTLHID QMRKRADSTN GTDRDTLSAQ NKFLNSEILR MSAKCEILTM
301 QSSGNRKSHR ENKRLTEELQ LLRCDYVYAI QSTIRIPLHD NTAMDVMSVK LLGGETHKSR
361 LIQLMAEARQ HDPSLPTLQS LLQGIYVDSF GFRISFKEEP NALHYMATKL NHFYANRSKS
421 ASEHKYNWKR FLEENDFIDL TPETKIMCRK GIPNSLRATV WKILINQQVE DLKNVYGKYY
481 YRNLCNIQGG EDEKTYSDVH QKQINLDLLR TMPNNVHFMS ANSKGVTQLL QVLHAFCLHN
541 SQIGYCQGMN FLAATALLFV GPEDAFWFLI AVTERYFDKT YFDSNLTGAQ ADQEVLKGLL
601 EVQHPKIMKH LKSLDIDVAS FTLNWFISLF FDAVPFNTLL RIWDCFLLEG PKVLFRFAIV
661 LIGKHEEEII SRGDAIGIMR VSKAATKLAF DEEAIVNMAF RIPNLPTRIE LKNMQLQYVN
721 LLAERLEKKM RRANEFVKSI ANNLTNEKLI SNIFIDTFTP NTGFIVSGHH LMGKIAGIKV
781 VKDKACMKNI DVEFDCRVMS ICMVRKDMAY VSLISGYLIA AHVNSENEWS ILWELKLPDV
841 ATFLIHQENT LFAGLANGIL TVFENAGERW PTSVQMWHMP LSSSPLTNAV IHDDTLVVAT
901 ACKLITLDAQ SLTTLSTTHV ASSNVGSGVI YFDKITCMTE SPFGIFLTTN HSTLIQLWHD
961 TACNLLYDIS FDHKTRKPSL SDTENSNYVE SMLFNDETLW LGTSDGYVFI YNVENETGKE
1021 EVKYKLKRFP GEKRPSRRGS SARSQRLGSL IENNDESDDN ETVPIFCAEK RASRVSISID
1081 RETHQYSIAS FQQNPEDVDF PGSTYSRLNS SSSKTLRSPM KKGFSADSAV SVFSSEPNEL
1141 IEKCDENFLS VKKEKDSPRF RDNRFFSSTN SSCTSMEYDD TFELYSDEER SRRRVAITSH
1201 KRFATPSKQL NLQRKDLTFD DPYIVPVPES ADKETSNDVE DSAVVSSVRL SLFMKLKISE
1261 TSVRKIISSG EHHILTCSGE FGADEAVLLW RKDISTNLWI NDPVTHEVPN IPPSSKTSSS
1321 TPASIQSLSF RSK
//