LOCUS CAB01686.2 1240 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Trafficking protein particle complex
subunit 9 protein.
ACCESSION BX284606-2777
PROTEIN_ID CAB01686.2
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="trpp-9"
/locus_tag="CELE_C35C5.6"
/standard_name="C35C5.6"
/note="Confirmed by transcript evidence"
/db_xref="EnsemblGenomes-Gn:WBGene00007956"
/db_xref="EnsemblGenomes-Tr:C35C5.6"
/db_xref="GOA:Q93330"
/db_xref="InterPro:IPR013935"
/db_xref="UniProtKB/TrEMBL:Q93330"
/db_xref="WormBase:WBGene00007956"
intron_pos 22:0 (1/16)
intron_pos 72:0 (2/16)
intron_pos 140:0 (3/16)
intron_pos 190:0 (4/16)
intron_pos 216:2 (5/16)
intron_pos 262:1 (6/16)
intron_pos 405:2 (7/16)
intron_pos 533:2 (8/16)
intron_pos 589:0 (9/16)
intron_pos 644:2 (10/16)
intron_pos 681:1 (11/16)
intron_pos 747:2 (12/16)
intron_pos 996:2 (13/16)
intron_pos 1087:0 (14/16)
intron_pos 1148:1 (15/16)
intron_pos 1189:0 (16/16)
BEGIN
1 MKSSTSDFLT DVQTVNIVIK QIGPNKSLPA FKRIVERCSR QRVIQVSDNP RRLFHCSFIQ
61 SSSYTEFSEL QQHRRVFAVI GVGFTNGQGE PADKSTRASR ESTDSEVSES EQISNAYNKL
121 KSDYSNIICS RCIIIGGKDE EFDLIERHER LCFPSLEDAT QLESAVRELM RAIYIVIEMK
181 RVDVSFEKKQ EIPCPILPDE SRWQVGVDTK STKSYRKKCL GRCRKQHADY CLLTGLPQLA
241 LEAYEGAIES LKSAQDHLWL AAAYDGWAST VCILHAEQMG EINCGAFHRV ASMHAMLTIP
301 SIEINTQTGD SLSVSNDSVL RYPSGNKEEM KLQSDFSSPQ GHKRHHSDEH VRVTSSMSNG
361 IERNESFGNE SGIVSNGSSP SIREEPTKVK ASKGLNPLSN FLSDRREKPT KERVMENFKN
421 SIDEFSKFTM AGWLEYETVM RGIMYLILER EYIKLEQFHR DYTGKYLDDS NTFMDHRMKS
481 QICLNSAAMY REIGFLRKQA FYARLSVLFE LHVTEGRVRQ ASDYKIVYPV LFKTLEGYGV
541 ELGEPHDIKN KKLGPVKLQI KSLHEIFTAA NRAGHRDAAI RHLCFLLQVY YPHLDSSMTT
601 RLFEDLDNLV KATNLVHQLN QTIVVDDGKI IIPGLQLTRF PIIQSPTVLA LQSNLAPTIV
661 PNKCQASIFI YTPFAKKADN ALLWVTDCPG EVEVTVKNCR GSELVVKDLC LIVEGVNFEP
721 VQARLILPPE DEENQSGSTI RLLGVPRESG DLFITGYSCN IFGLHNECRF FSSNGQKPNK
781 IRVKVLPKLA RVYLECSLPR APIEEDNDEP SAEAVVYSGQ NFDHTITVVN NSDIPVRYCG
841 VKIWQPIVQG GPPLICLDDL ETHSQEIEGC ETTDDLSSFT LEPNGSKELQ FHIFGIDPTS
901 TADDLSDEEK VLESVVPLAT THAIPNPDSE SNDMDLIPFT GRLLTAEFIV RYHSDITTED
961 GNSFERKCKL PIAISIIPAV TVSAWHVLPG DSPFSRYIVV DVTNSTEHDA ELVYSNSRRM
1021 YVLPKETCRV PILSPCCSDV TGGAFHQAKQ RGSHMMQKME TERLRLILEN HVSKHLDIRW
1081 SIPALNLDGQ VPVGSLLSSV SLLKQLVLPA ISLDFFVNGK QYVSEDDVTV GIGQFVTVEV
1141 SIISSLAAEY NGILSLECEQ EISHLLGSND TSSFMLVTGA KKIPFTVDKE NKQSATFNLA
1201 FIVEGSFRVR PQITPAPGQN ALLAEDMFAT PVAFSVSTKF
//